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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTAATTCCAGATGGTATTGACAAGAATGGCAAACCTCATAAACTGAGATTGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatcatgtcatattttacattattgtttctactttccggggtttaattttttaaacaatataaagcttttattttatcaattttgttgctttcat...

Basic information

species Glycine max
transcript GLYMA02G05350.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05350.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g03510.t01 (Vitis vinifera), 5'ss of exon 3
GGTAATTCCAGATGGTATTGACAAGAATGGCAAACCTCATAAACTGAGATTGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatcatgtcatattttacattattgtttctac--tttccggggtttaattttttaaacaatataaagcttttattttatcaattttgttgctttcat-
||||||| |||||||| ||||||||||||| || ||||| || ||||||||||| || ||||| ||||||||| ||||||| |||||||| ||||||||||| ||  |  |         |   ||    |||| |   ||   ||  |  |   |  || | |||  || |      |||| |||| | |||    || || 
GGTAATTGCAGATGGTGTTGACAAGAATGGGAAGCCTCACAAGCTGAGATTGTACTCAATTGCAAGCAGTGCCCTTGGTGACTTTGGAGACTCCAAAACTgtaagccttttacttccaaatgatttgcactttccatagttataggattgcagcatagtatataattgaatggg---gttttctcaagtctgtatgatttata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796286|gb|AW781683.1|AW781683
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|213607151|gb|DB965093.1|DB965093
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTC-AAAACT                         GTTTCTCTATGCG
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCG
EST: gi|213603747|gb|DB956284.1|DB956284
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|209707451|gb|BW664910.1|BW664910
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|209717950|gb|BW666143.1|BW666143
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAAT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAAT
EST: gi|213607657|gb|DB958676.1|DB958676
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|120533254|gb|EH261387.1|EH261387
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|151401376|gb|EV271190.1|EV271190
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|12688950|gb|BG155286.1|BG155286
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTNTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAGATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|209727185|gb|BW655223.1|BW655223
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTG
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTG
EST: gi|213611912|gb|DB958922.1|DB958922
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|151409217|gb|EV279025.1|EV279025
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|213604735|gb|DB956090.1|DB956090
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|209709563|gb|BW661890.1|BW661890
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|5509655|gb|AI856213.1|AI856213
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTA
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTA
EST: gi|192317371|gb|FK007493.1|FK007493
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|209726964|gb|BW675366.1|BW675366
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGAT-CCAAAACT                         GTTTCTCTATGCGTGAAA
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAA
EST: gi|213594233|gb|DB966134.1|DB966134
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|213597241|gb|DB962487.1|DB962487
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|209709774|gb|BW668256.1|BW668256
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|209705754|gb|BW661422.1|BW661422
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|209714651|gb|BW671573.1|BW671573
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAA
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAA
EST: gi|20812572|gb|BQ297050.1|BQ297050
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|9258191|gb|BE346338.1|BE346338
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTGTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|11413683|gb|BF425694.1|BF425694
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|213589019|gb|DB973119.1|DB973119
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|15288011|gb|BI471902.1|BI471902
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGA
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGA
EST: gi|209717071|gb|BW671378.1|BW671378
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|13562564|gb|BG550784.1|BG550784
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|192317372|gb|FK007494.1|FK007494
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|209714818|gb|BW657360.1|BW657360
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|213595190|gb|DB962329.1|DB962329
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
EST: gi|213589650|gb|DB965838.1|DB965838
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAAACG-CTGGTGTACACAAATGAAAATGGAGAAAT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAA-CGGCTGGTGTACACAAATGAAAATGGAGAAAT
EST: gi|120533554|gb|EH261687.1|EH261687
EST:     TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACT                         GTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT
genomic: TGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatca ... ttccatgcagGTTTCTCTATGCGTGAAACGGCTGGTGTACACAAATGAAAATGGAGAAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTAATTCCAGATGGTATTGACAAGAATGGCAAACCTCATAAACTGAGATTGTATTCTATTGCTAGCAGTGCCATTGGTGATTTTGGAGATTCCAAAACTgtgagtatcatgtcatattttacattattgtttctactttccggggtttaattttttaaacaatataaagcttttattttatcaattttgttgctttcat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT