Sequence
atgc intronic sequence ATGC exonic sequenceTCAACAAGGATTGGCTTTCAATGGAAAGCGAACAAAGACTGCAAGATCTCAAGGAAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCCACTAGATTGCTGgtaagaatagaatagcacataataaaaaagtgaacttttatactcttttgtgtggcttatatgaaactgaaatgggattgttttgaaatgtag
Basic information
species | Glycine max |
transcript | GLYMA02G05170.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G05170.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G51280.1 (Arabidopsis thaliana), 5'ss of exon 3
TCAACAAGGATTGGCTTTCAATGGAAAGCGAACAAAGACTGCAAGATCTCAAGGAAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCCACTAGATTGCTGgtaagaatagaatagcacata-ataaaaaagtgaacttttatactcttttgtgtggcttatatgaaactgaaatgggattgttttgaaatgtag
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ACAGAAAGGACTCGCTTTCAATGGTAAACGAACCAAAACAGCTAGATCTCAAGGCAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCTACTCGGTTACTGgtaagcagcaatttcaaaatgtgcattatgtttagcaattac-caagtttgtgt---taattcttaattggatgatgattggtttgaaacag--
upper sequence: GLYMA02G05170.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g03720.t01 (Vitis vinifera), 5'ss of exon 3
TCAACAAGGATTGGCTTTCAATGGAAAGCGAACAAAGACTGCAAGATCTCAAGGAAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCCACTAGATTGCTGgtaagaatagaatagcacataataaaaaagtgaacttttatactcttttgtgtggcttatatgaaactgaaatgggattgttttgaaatgtag
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TCAACAAGGGATGGCTTTCAATGGGAAGCGCACCAAGACTGCCAGATCCCAAGGGAAAAAATTTCAGGTGTCCGTGGGACAAGAAGCGACTCGGTTACTGgtaagcacacggtttttctgctagtttcagtcctctatctcactcccttaaac--tccatattgagacgaatttccatttcag----------
upper sequence: GLYMA02G05170.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g03740.t01 (Vitis vinifera), 5'ss of exon 3
TCAACAAGGATTGGCTTTCAATGGAAAGCGAACAAAGACTGCAAGATCTCAAGGAAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCCACTAGATTGCTGgtaagaatagaatagcacataataaaaaagtgaacttttatactcttttgtgtggcttatatgaaactgaaatgggattgttttgaaatgtag
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TCAACAAGGGATGGCTTTCAATGGGAAGCGCACCAAGACTGCCAGATCCCAAGGGAAAAAATTTCAGGTGTCCGTGGGACAAGAAGCGACTCGGTTACTGgtaagcacacggtttttc-tgctagt----ttcagtcctctatctctccctaaactccatattgagacgaatttccatttcag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193563127|gb|FK520302.1|FK520302EST: AAGGAAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCCACTAGATTGCTG GGAAACTTGGGATGGGCACTGATGCAACAGAACAATTACATAGAAGCAGAA
genomic: AAGGAAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCCACTAGATTGCTGgtaagaatag ... tgaaatgtagGGAAACTTGGGATGGGCACTGATGCAACAGAACAATTACATAGAAGCAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAACAAGGATTGGCTTTCAATGGAAAGCGAACAAAGACTGCAAGATCTCAAGGAAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCCACTAGATTGCTGgtaagaatagaatagcacataataaaaaagtgaacttttatactcttttgtgtggcttatatgaaactgaaatgggattgttttgaaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC