Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAGCCTTATGCAGTTGAGGTGTTGGCCAATGGGGAGCTTCTTATTCTGGATTCGGCTAATAGTAACATTTATAGGATTTCGTCCTCGCTTTCTTTGAgtaagtgtgtgtttatttggtaggatggtagcttaagtttgtgatctgacttgtttgatttatctattatttaatttagttttgtaaaatcagcataact...

Basic information

species Glycine max
transcript GLYMA02G03810.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03810.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0026g00330.t01 (Vitis vinifera), 5'ss of exon 3
ATTGAGCCTTATGCAGTTGAGGTGTTGGCCAATGGGGAGCTTCTTATTCTGGATTCGGCTAATAGTAACATTTATAGGATTTCGTCCTCGCTTTCTTTGAgtaagtgtgtgtttatttggtaggatggtagcttaagtttgtgatctgacttgtttgatttatctattatttaatttagttttgtaaaatcagcat-aact----
||||| || ||  || ||||||| |||| || |||||| ||||| ||||||||||| ||||| |||||| | || | ||| || ||||| || |||    |||||||  | ||  | |  ||   ||| | |||   ||  |  || | |||||||  |  | |  || |||   | | || | ||| ||   | |  | |    
ATTGAACCCTACTCAATTGAGGTTTTGGGCAGTGGGGAACTTCTGATTCTGGATTCTGCTAACAGTAACCTGTACAAGATCTCTTCCTCACTGTCTCAATgtaagtggat-ttattgtaataacttggaatctttgcttgat--tcggtcttgttttgtgaaacatttgtttg--taatttgtttaagattctcgttgagtatgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213595695|gb|DB962467.1|DB962467
EST:     GGATTCGGCTAATAGTAACATTTATAGGATTTCGTCCTCGCTTTCTTTGA                         ATACCAGACCAAAGCTGGTGGCAGGATCTGCTGAAGGATATTCTGGACATG
genomic: GGATTCGGCTAATAGTAACATTTATAGGATTTCGTCCTCGCTTTCTTTGAgtaagtgtgt ... aattttgcagATACCAGACCAAAGCTGGTGGCAGGATCTGCTGAAGGATATTCTGGACATG
EST: gi|151396366|gb|EV266243.1|EV266243
EST:     GGATTCGGCTAATAGTAACATTTATAGGATTTCGTCCTCGCTTTCTTTGA                         ATACCAGACCAAAGCTGGTGGCAGGATCTGCTGAAGGATATTCTGGACATG
genomic: GGATTCGGCTAATAGTAACATTTATAGGATTTCGTCCTCGCTTTCTTTGAgtaagtgtgt ... aattttgcagATACCAGACCAAAGCTGGTGGCAGGATCTGCTGAAGGATATTCTGGACATG