1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCCCACCTGCTTATGGGAACTGTGAATTTCAGCCCTACCAAGGGCTTCAACCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGGgtatgcaatattaatcaacattcatttacttatttgtgtcacatttctcttgttttgctcttgaaagatgttcatcaaagcaaagaggttataggctaattaatcatgtctaatggagcag
species | Glycine max |
transcript | GLYMA02G03740.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGG GTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGAEST: gi|151393888|gb|EV263759.1|EV263759
genomic: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGGgtatgcaata ... aatggagcagGTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGA
EST: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGG GTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGAEST: gi|10232292|gb|BE801180.1|BE801180
genomic: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGGgtatgcaata ... aatggagcagGTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGA
EST: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAATG GTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGAEST: gi|193528470|gb|FK486772.1|FK486772
genomic: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGGgtatgcaata ... aatggagcagGTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGA
EST: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGG GTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGAEST: gi|192306018|gb|FG993636.1|FG993636
genomic: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGGgtatgcaata ... aatggagcagGTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGA
EST: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGG GTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGAEST: gi|9564215|gb|BE473724.1|BE473724
genomic: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGGgtatgcaata ... aatggagcagGTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGA
EST: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAANG GTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGAEST: gi|209709438|gb|BW668366.1|BW668366
genomic: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGGgtatgcaata ... aatggagcagGTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGA
EST: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGG GTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGAEST: gi|151396617|gb|EV266494.1|EV266494
genomic: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGGgtatgcaata ... aatggagcagGTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGA
EST: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGG GTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGA
genomic: CCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGGgtatgcaata ... aatggagcagGTTGATAGGAAAAGTGGCTGCAGATCACAGCCACAAGTGGATATACAAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCACCTGCTTATGGGAACTGTGAATTTCAGCCCTACCAAGGGCTTCAACCGGAGCTCTTCTTCAAGATGTCACATGAGATCTATAACTATGGAGAAGGgtatgcaatattaatcaacattcatttacttatttgtgtcacatttctcttgttttgctcttgaaagatgttcatcaaagcaaagaggttataggctaattaatcatgtctaatggagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA