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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTGGGTAACTGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAATGGGAAATTTATGGGTTGGTGAATCTGGGCATGAGAATGAGAAGgtataaaatgtggaagattttaccttgtctgtgtacagcacaacacacacacacacacacacatttgtacatattatagacttgtcaaatttcattttaa...

Basic information

species Glycine max
transcript GLYMA02G03160.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03160.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g32910.1 (Oryza sativa), 5'ss of exon 3
GAAGTGGGTAACTGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAATGGGAAATTTATGGGTTGGTGAATCTGGGCATGAGAATGAGAAGgtataaaatgtggaagattttaccttgtctgtgtacagcacaacacacacacacacacacacatttgtacatattatagacttgtca--aatttcattttaa-----
||| ||||| |||||||||||||||||||| || || ||||||||||| ||||| |  || | | | |||||||  ||||| ||  |||| ||  | |||||| |     |      | |||  |  |   |||| | || ||  |    ||  |||  |     | | ||| |||| ||    | |  |||   |  ||||     
GAAATGGGTGACTGGTGCATTTGCTGGTCACACTGCTGTTTGCTTGAAAGATGAGAACGGCACTCTCTGGGTTGCAGAATCAGGCTATGAAAACAAAAAGgtacat----ttatgtttcttatttcat---tgtataacataattccactacctacattcttgaatcttcatcttatggatacataagcaatgcaagattaacagtt

upper sequence: GLYMA02G03160.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g22440.1 (Oryza sativa), 5'ss of exon 3
GAAGTGGGTAACTGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAATGGGAAATTTATGGGTTGGTGAATCTGGGCATGAGAATGAGAAGgtataaaatgtggaagattt---taccttgtctgtgtacagcacaacacacacacacacacacacatttgtacatattatagacttgtcaaatttcattttaa
||| ||||| |||||||| |||||||| || || |||||||||||||| ||||| | |||  |  | |||||||  ||||| ||   ||| ||||| ||||||||   ||  |||   |       ||||   || | ||  | |      |||       | |  | ||     |||  | |    |||  |   |||    
GAAATGGGTGACTGGTGCGTTTGCTGGGCACACCGCAGTTTGCTTGAAAGATGAGAAGGGTGAAGTTTGGGTTGCGGAATCAGGCTTTGAAAATGAAAAGgtatagtttgctgaactgtcgtgcgtcttgaaagtttgcatgatattgtctacatgtg---atatgtgtgctagcattgaatatcgatcatgtcctattgctt

upper sequence: GLYMA02G03160.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G70160.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAGTGGGTAACTGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAATGGGAAATTTATGGGTTGGTGAATCTGGGCATGAGAATGAGAAGgtataaaatgtggaagattttaccttgtctgtgtacagcacaacacacacacacacacacacatttgtacatattatagacttgtcaaatttcattttaa
||| ||||| ||||| || |||||||||||||| || ||||| |||||||||||  |||| ||| | |||||||||||||| || |||||||| || |||||| |        || |||||     ||  ||| | || |  | | | |     ||  |    |||   ||||                           
GAAATGGGTGACTGGGGCTTTTGCTGGTCATACTGCTGTTTGTTTGAAGGATGATTTGGGGAATCTTTGGGTTGGTGAATCAGGACATGAGAACGAAAAGgtagac----ctaaacattttga--agttagtggatagaaagagagatat-tttac-tatctttttccccatag--------------------------

upper sequence: GLYMA02G03160.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0026g00920.t01 (Vitis vinifera), 5'ss of exon 3
GAAGTGGGTAACTGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAATGGGAAATTTATGGGTTGGTGAATCTGGGCATGAGAATGAGAAGgtataaaatgtggaagattttaccttgtctgtgtacagcacaacacacacacacacacacacatttgtacatattatagacttgtcaaatttcattttaa---
 || |||||||| ||||||||||||||||||||||||||||||||||||||||||  ||| ||| | ||||||||||| || ||||| ||||| || |||||||   |   | ||  | ||     |       |    ||||||  |||| |  ||    | ||| || || | |      | || | |    || ||    
AAAATGGGTAACAGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAGgtatgctagcagtaatgtattga--agaaaagaaaattgacaacatgcacaaaagcagtatcgtttata-atttcacttgaatttctagtacggttgtatcca

upper sequence: GLYMA02G03160.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S307_69V6.1 (Physcomitrella patens), 5'ss of exon 3
GAAGTGGGTAACTGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAATGGGAAATTTATGGGTTGGTGAATCTGGGCATGAGAATGAGAAGgtata----aaatgtggaagat-tttaccttgtctgtgtacagcacaacacacacacacacacacacatttgtacatattatagacttgtcaaatttcattttaa
||| |||||| | ||  | |   ||||||| ||||| |||||||||   |||||    || || |||||||||||||||||||| ||||||||||| |||||       |||| || | ||  ||  |  | ||||  |   |    | | |  | ||   |   |  | |     | ||||  |||| |||             
GAAATGGGTATCGGGGTCGTACTCTGGTCACACAGCTGTTTGCTTGCGTGATGACGATGGCAAGTTATGGGTTGGTGAATCTGGCCATGAGAATGAAAAGgtgagcagcaaatttgtaggaaattcgcagtatctgcat-tggtttcatatagtcgca---attgatctctaatttttttatgtacttttcag------------