Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTGACGCCTTCTTGAAATTGACAGgttctaaagccgttaccttgtataaattagatcaacttcaaatgaacttctacaaatgtaaaatgaattaaattttcatctcaagttaatatcagcctat...

Basic information

species Glycine max
transcript GLYMA02G02600.5
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G02600.5 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0026g01590.t01 (Vitis vinifera), 5'ss of exon 4
AACTAATCCGCATTTACCAGACATGCCTATTGTTTATGCTAGTGACGCCTTCTTGAAATTGACAGgttctaaagccgtta-----ccttgtataaattagatcaac-------ttcaaatgaacttctacaaatg----taaaatgaattaaattttc-atctcaagttaatatcagcctat------------------------------------
 ||| |||| |||||||| || ||||| || |||||||| ||||| |||||||| |||||||||||| || ||  | |||     |  |  | | |||   |   |       ||   | ||| ||  | |  |     || || ||  |  |  ||  || | | | || ||| |  | ||                                    
GACTGATCCCCATTTACCTGAGATGCCAATCGTTTATGCAAGTGATGCCTTCTTAAAATTGACAGgtgctcaaagctttatagagctatacacacattgatttgtcctagccctttgtaggaaatttcatagtttgagctagaaagatctggaccttggatattatgata-tattaaacaatcaagcttcttactaatccttatttctattttaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193549059|gb|FK505410.1|FK505410
EST:     ACCAGACATGCCTATTGTTTATGCTAGTGACGCCTTCTTGAAATTGACAG                         GTTATGCAAAAAATGAAGTTTTGGGCCACAACTGTAGATTTTTAGGTTGGA
genomic: ACCAGACATGCCTATTGTTTATGCTAGTGACGCCTTCTTGAAATTGACAGgttctaaagc ... acttgaatagGTTATGCAAAAAATGAAGTTTTGGGCCACAACTGTAGATTTTTAGGT-GGA
EST: gi|208098763|gb|GD891418.1|GD891418
EST:     ACCAGACATGCCTATTGTTTATGCTAGTGACGCCTTCTTGAAATTGACAG                         GTTATGCAAAAAATGAAGTTTTGGGCCACAACTGTAGATTTTTAGGTGGAA
genomic: ACCAGACATGCCTATTGTTTATGCTAGTGACGCCTTCTTGAAATTGACAGgttctaaagc ... acttgaatagGTTATGCAAAAAATGAAGTTTTGGGCCACAACTGTAGATTTTTAGGTGGAA