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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCTTGTTAAACTTGTAGGTTACTGCATTGAAGAGGATCAAAGGTTGCTAGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGAgtaagtaactattttattatatctaattagtttcacattttctttttcaagaacaatagttggaccactgctgcaccttgaaattttttagtaacatcaa...

Basic information

species Glycine max
transcript GLYMA02G02570.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G02570.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g40590.1 (Oryza sativa), 5'ss of exon 3
AACCTTGTTAAACTTGTAGGTTACTGCATTGAAGAGGATCAAAGGTTGCTAGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGAgtaagtaactat-tttattatatctaattagtttcacattttc-tttttcaagaacaat----agttggaccactgct-gcaccttgaaattttttagtaacatcaa
 |||| || ||| | || ||||||||||| ||||| || |||||||||||||||||||| || |||||||| || ||| |||| |||||  | |||||||||||| | || |   |  ||     | | | |||    ||  | ||| |    |||| |    ||||    || || |  |      |  |||| | |||       
CACCTAGTGAAATTGGTTGGTTACTGCATCGAAGATGACCAAAGGTTGCTAGTGTATGAATTTATGCCTCGTGGAAGCTTGGAGAACCATCTTTTTAGGAgtaagaatctttgcgtcctactgtcagtcatttttttcttcccatttgttgccaacagtttggagttctttcattgttcacggtagcagtttttcttgta-------

upper sequence: GLYMA02G02570.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G150806_T01 (Zea mays), 5'ss of exon 3
AACCTTGTTAAACTTGTAGGTTACTGCATTGAAGAGGATCAAAGGTTGCTAGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGAgtaagtaactattttatt--------------------atatctaattagt-ttcacattttctttttcaa-gaacaatagttggaccactgctgcaccttgaaattttttagtaac-atcaa----------------------------------------------------------------------------
||  | || ||  |  | || || ||  ||||||| || ||||||||||| |||||||| ||||||||||| || ||  |||| |||||  | ||||| |||| ||| ||   |||||                    |  |||  ||||  ||||| |||| || || |   || ||| ||    |   ||  |   | |||  || |   |||   ||                                                                               
AATTTGGTCAAGTTGATTGGATATTGTGTTGAAGATGACCAAAGGTTGCTGGTGTATGAATTCATGCCTCGTGGCAGTTTGGATAACCATCTTTTTAGAAgtatgtatctggcttattccttaatgattggagcactaacttctgtttaggattcacctttttttcttaagcaaataatcgtgtatcatatgagggcgcatgatgttctcctgtatttatttgtgtagcttaggcatcctttaaatagtatcatggaaatgttgaatcttaaagtaaacaattctgctttctactgtag

upper sequence: GLYMA02G02570.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0026g01620.t01 (Vitis vinifera), 5'ss of exon 3
AACCTTGTTAAACTTGTAGGTTACTGCATTGAAGAGGATCAAAGGTTGCTAGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGAgtaagtaactattttattatatctaattagtttcacattttctttttcaagaacaatagttggacc--actgctgcaccttgaaattttttagtaacatcaa-
|| || || |||||  | ||||| ||||||||||| ||||||||||||||||| |||||||| |||||||| || ||  |||| || ||  | |||||||||| ||| || | ||  | |   ||||    ||| ||| ||   ||||   ||  |   ||||| |  | |  || | ||| |   ||  | |||    |   
AATCTGGTCAAACTGATTGGTTATTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAGTTTATGCCTCGAGGGAGTTTGGAGAATCATCTGTTTAGGAgtatgtacctgtctttctgt---taatattattctcatctttcatttccttaatgaattttggagctaaatcttgaatctttacgattccttgtacttacgta

upper sequence: GLYMA02G02570.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ22709 (Selaginella moellendorffii), 5'ss of exon 3
AACCTTGTTAAACTTGTAGGTTACTGCATTGAAGAGGATCAAAGGTTGCTAGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGAgtaagtaactattttattatatctaattagtttcacattttctttttcaagaacaatagttggaccactg-ctgcaccttgaaattttttagtaacatcaa
|| || || ||  |  | |||||||||   || || || ||  |  | || || || |||||||||||||| |||||||||||||||||  ||||| | |||||||  ||      | |||   |  |||       |||| | | | | || ||   | |    |  || || ||  ||  | | || | ||     || 
AATCTCGTAAAGTTGATTGGTTACTGCGCGGAGGACGAGCATCGACTTCTTGTCTACGAGTTCATGCCTCGCGGTAGCCTGGAAAACCATCTATTTCGCAgtaagttgct----cgtcatagtga--tag-------ttttttctcttacgaccatccgctcacgcgttgtcttcaaattttattgttcttgttttggcag

upper sequence: GLYMA02G02570.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ19239 (Selaginella moellendorffii), 5'ss of exon 3
AACCTTGTTAAACTTGTAGGTTACTGCATTGAAGAGGATCAAAGGTTGCTAGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGAgtaagtaactattttattatatctaattagtttcacattttctttttcaagaacaatagttggaccactg-ctgcaccttgaaattttttagtaacatcaa
|| || || ||  |  | |||||||||   || || || ||  |  | || || || |||||||||||||| |||||||||||||||||  ||||| | |||||||  ||      | | |   | |          |||| ||| | | ||  |   | |    |  || || ||  ||  | | || | ||     || 
AATCTCGTAAAGTTGATTGGTTACTGCGCGGAGGACGAGCATCGACTTCTTGTCTACGAGTTCATGCCTCGCGGTAGCCTGGAAAACCATCTATTTCGCAgtaagttgct----cgtcacagagagt----------ttttttttcttacgactatcggctcacgcgttgtcttcaaattttattgttcttgttttggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208289630|gb|GE088513.1|GE088513
EST:     AGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGA                         GATCCATTCCTCTTCCATGGTCCATTAGAATGAAAATTGCACTAGGAGCTG
genomic: AGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGAgtaagtaact ... attaatgtagGATCCATTCCTCTTCCATGGTCCATTAGAATGAAAATTGCACTAGGAGCTG
EST: gi|14125505|gb|BG789943.1|BG789943
EST:     AGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGA                         GATCCATTCCTCTTCCATGGTCCATTAGAATGAAAATTGCACTAGGAGCTG
genomic: AGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGAgtaagtaact ... attaatgtagGATCCATTCCTCTTCCATGGTCCATTAGAATGAAAATTGCACTAGGAGCTG
EST: gi|208264289|gb|GE062603.1|GE062603
EST:     AGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGA                         GATCCATTCCTCTTCCATGGTCCATTAGAATGAAAATTGCACTAGGAGCTG
genomic: AGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGAgtaagtaact ... attaatgtagGATCCATTCCTCTTCCATGGTCCATTAGAATGAAAATTGCACTAGGAGCTG
EST: gi|208276890|gb|GE077425.1|GE077425
EST:     AGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGA                         GATCCATTCCTCTTCCATGGTCCATTAGAATGAAAATTGCACTAGGAGCTG
genomic: AGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGAgtaagtaact ... attaatgtagGATCCATTCCTCTTCCATGGTCCATTAGAATGAAAATTGCACTAGGAGCTG
EST: gi|18040000|gb|BM308294.1|BM308294
EST:     AGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGA                         GATCCATTCCTCTTCCATGGTCCATTAGAATGAAAATTGCACTAGGAGCTG
genomic: AGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGAgtaagtaact ... attaatgtagGATCCATTCCTCTTCCATGGTCCATTAGAATGAAAATTGCACTAGGAGCTG
EST: gi|16996487|gb|BM085859.1|BM085859
EST:     AGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGA                         GATCCATTCCTCTTCCATGGTCCATTAGAATGAAAATTGCACTAGGAGCTG
genomic: AGTGTATGAGTTCATGCCTCGGGGTAGCCTGGAAAACCACTTATTTAGGAgtaagtaact ... attaatgtagGATCCATTCCTCTTCCATGGTCCATTAGAATGAAAATTGCACTAGGAGCTG