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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGGATGACACCCCCTGGGATGGAGgtacaataatatcttctaccttatttactcaaaaagactttattgtttcaatgttcacatgaaaatttctttgcatgtcctaagatactgttttgtttcc...

Basic information

species Glycine max
transcript GLYMA02G02400.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22541678|gb|BU091521.1|BU091521
EST:     ACCGGATGACACCCCCTGGGATGGAG                         GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
genomic: ACCGGATGACACCCCCTGGGATGGAGgtacaataat ... cgtctttcagGCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
EST: gi|15337304|gb|BI497960.1|BI497960
EST:     ACCGGATGACACCCCCTGGGATGGAG                         GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
genomic: ACCGGATGACACCCCCTGGGATGGAGgtacaataat ... cgtctttcagGCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
EST: gi|192329123|gb|FK019738.1|FK019738
EST:     ACCGGATGACACCCCCTGGGATGGAG                         GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
genomic: ACCGGATGACACCCCCTGGGATGGAGgtacaataat ... cgtctttcagGCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
EST: gi|192330836|gb|FK021609.1|FK021609
EST:     ACCGGATGACACCCCCTGGGATGGAG                         GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
genomic: ACCGGATGACACCCCCTGGGATGGAGgtacaataat ... cgtctttcagGCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
EST: gi|298164392|gb|HO014037.1|HO014037
EST:     ACCGGATGACACCCCCTGGGATGGAG                         GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
genomic: ACCGGATGACACCCCCTGGGATGGAGgtacaataat ... cgtctttcagGCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
EST: gi|298180824|gb|HO022263.1|HO022263
EST:     ACCGGATGACACCCCCTGGGATGGAG                         GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
genomic: ACCGGATGACACCCCCTGGGATGGAGgtacaataat ... cgtctttcagGCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
EST: gi|11413307|gb|BF425318.1|BF425318
EST:     ACCGGATGACACCCCCTGGGATGGAG                         GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
genomic: ACCGGATGACACCCCCTGGGATGGAGgtacaataat ... cgtctttcagGCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
EST: gi|298178672|gb|HO024407.1|HO024407
EST:     ACCGGATGACACCCCCTGGGATGGAG                         GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
genomic: ACCGGATGACACCCCCTGGGATGGAGgtacaataat ... cgtctttcagGCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
EST: gi|151394718|gb|EV264589.1|EV264589
EST:     ACCGGATGACACCCCCTGGGATGGAG                         GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
genomic: ACCGGATGACACCCCCTGGGATGGAGgtacaataat ... cgtctttcagGCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
EST: gi|298179938|gb|HO025153.1|HO025153
EST:     ACCGGATGACACCCCCTGGGATGGAG                         GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
genomic: ACCGGATGACACCCCCTGGGATGGAGgtacaataat ... cgtctttcagGCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
EST: gi|151405335|gb|EV275149.1|EV275149
EST:     ACCGGATGACACCCCCTGGGATGGAG                         GCACGTTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
genomic: ACCGGATGACACCCCCTGGGATGGAGgtacaataat ... cgtctttcagGCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
EST: gi|254334254|gb|GR849172.1|GR849172
EST:     ACCGGATGACACCCCCTGGGATGGAG                         GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
genomic: ACCGGATGACACCCCCTGGGATGGAGgtacaataat ... cgtctttcagGCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
EST: gi|298175146|gb|HO014949.1|HO014949
EST:     ACCGGATGACACCCCCTGGGATGGAG                         GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
genomic: ACCGGATGACACCCCCTGGGATGGAGgtacaataat ... cgtctttcagGCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
EST: gi|5509647|gb|AI856205.1|AI856205
EST:     ACCGGATGACACCCCCTGGGATGGAG                         GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC
genomic: ACCGGATGACACCCCCTGGGATGGAGgtacaataat ... cgtctttcagGCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCGGATGACACCCCCTGGGATGGAGgtacaataatatcttctaccttatttactcaaaaagactttattgtttcaatgttcacatgaaaatttctttgcatgtcctaagatactgttttgtttcc

- - - - - - - - -  GATGGA