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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGCACAAGAAGTAGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGGAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagttactgcttcctactattatttgtcagctgcacctaaccttaaccttaaggttctgtatacaaacatgttatagctcacatttaaggatct...

Basic information

species Glycine max
transcript GLYMA02G01930.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g21950.1 (Oryza sativa), 5'ss of exon 3
AGCAGCACAAGAAGTAGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGGAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagttactgcttcctactattatt-tgtcagctgcacctaaccttaaccttaaggttctgtatacaaacatgttatagctcacatttaaggatct-
 || || || || || || || ||| |  || | ||||| ||||| || ||| | |||||||||||||||||||| ||||| |||||||| || || ||||||  ||  || |   |    |||| |||| | | |  ||    ||   ||       |     |  ||      |  |   |     | || |||  |   
GGCTGCTCAGGAGGTTGCTGAAGGACAGTTAGATGACCACTTTCCACTTGTTATCTGGCAAACTGGGAGTGGCACACAAAGCAACATGAACGCCAATGAGgttttttt-ttcccattatgcactactattgtatgaattgtctatactgtttgttactaataattaaatgtgg-tacctgccaatgtgcgttaaagctttga

upper sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 6
AGCAGCACAAGAAGTAGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGGAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagttac-tgcttcctactattatttgtcagctgc-acctaaccttaaccttaaggttctgtatacaa-acatgttatagc--tcacatttaaggatct
 |||||  | || || || ||||||||  || | || || || || || ||| | ||||||||||| |||||||| ||||| ||||||||||| || ||||||  |    ||| |      || | ||| |    | || | |   ||| | ||  |||| ||  | ||         ||  || |   || |   |||      
GGCAGCTGAGGAGGTCGCAGAGGGAAAGTTAGATGATCACTTCCCACTTGTTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgttggtgtcctacatatccaatatttttactccaaatcttccataaaacgtcaattttaaagtagtatagctgttgtttggaatggtagtccctgctaaa-----

upper sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 5
AGCAGCACAAGAAGTAGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGGAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagttac-tgcttcctactattatttgtcagctgcaccta--accttaaccttaaggttctgtatacaa-acatgttatagc--tcacatttaaggatct
 |||||  | || || |  ||||||||  |  | || || || || || |||   ||||||||||| |||||||| ||||| ||||||||||| || ||||||  |    |||        || | ||| ||   | || |    |  || | ||  |||| ||  | ||         ||  || |   || |   |||      
GGCAGCTGAGGAGGTCGTAGAGGGAAAGTTGGATGATCACTTCCCACTTGTTACCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgttggtgtcctacacatccaatatttttacttcaaatcttccataaaaacgtcaattttaaagtagtatagttgttgtttggaatggtagtccctgctaa------

upper sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G010823_T01 (Zea mays), 5'ss of exon 3
AGCAGCACAAGAAGTAGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGGAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagttac-tgcttcctactattatttgtcagctgcaccta--accttaaccttaaggttctgtatacaaacatgttatagctcacatttaaggatct
 |||||  | || || || ||||||||  |  | || || || || || ||| | ||||||||||| |||||||| ||||| ||||||||||| || |||||   |    |||   |    || | ||| ||   | || |    |  || | ||  |||| ||  | ||        | || |   |  || |    |    
GGCAGCTGAGGAGGTCGCAGAGGGAAAGTTGGATGATCACTTCCCACTTGTTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcctacacacccaatatttttacttcaaatcttccataaaaacatcaattttaaagtagtatagctgttttttttttgaatggcaatccctgc---

upper sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 4
AGCAGCACAAGAAGTAGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGGAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagttactgcttcctac-tattatttgtcagctgcacctaacct---taaccttaaggtt---ctgtatacaaacatgttatagctcacatttaaggatct----------------
||| || || |||||||| |||||||| || || || ||||| || || ||||| ||||||||||| ||||| ||||| ||||| ||||||||||| ||||| | ||  || | | ||   |   ||   |||       ||    |  |   || |   |||      || | |    |  | || |   |  | |||     | |                
AGCTGCTCAGGAAGTAGCTGAGGGAAAGCTCAATGATCATTTCCCCCTTGTTGTCTGGCAAACTGGTAGTGGGACTCAGAGTAATATGAATGCTAATGAGgtaatttctttgcagtttttgagacatctgttgaggatctcattgtatatagctagctacaagagaaggctttctgtttatgttttttcattttcttttggccttgttatttgctcttcacag

upper sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 3
lower sequence: AT5G50950.3 (Arabidopsis thaliana), 5'ss of exon 2
AGCAGCACAAGAAGTAGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGGAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagttac---------tgcttcctactattatttgtcagctgcacctaaccttaaccttaaggttctgtatacaaacatgttatagctcacatttaaggatct
||| |||||||||||||| || ||||| || || || ||||| ||||| ||||||||||||||||| ||||| || || ||||| ||||||||||| |||||   |||  | |            ||  ||| ||  |     ||    |||     |  | |  ||  |  |  |  |  |      |||  |||   |         
AGCTGCACAAGAAGTAGCAGAAGGAAAGCTCAATGATCATTTCCCTCTTGTTGTATGGCAAACTGGTAGTGGGACGCAGAGTAATATGAATGCTAATGAGgtaccttatatgcatggagatacattttgtacaatcctacacaagtgctaccagtggtggatcccaaaatatttcaatcggaggaacaatatttcatcgt---------

upper sequence: GLYMA02G01930.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 4
AGCAGCACAAGAAGTAGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGGAGTGGCACTCAAAGTAACATGAATGCTAACGAGgtta--attagttactgcttcctactattatttg-tcagctgcacct--aaccttaaccttaaggttctgtatacaaacatgttatagctcacatttaaggatct
|||||| ||||||||  | |||||||||||||| || |||||||| |||||  ||||||||||||| |||||||||||||||||||||||||| || ||||| |  ||  |||  ||   | | || |  | || |  |  ||  ||  |    ||  |  | ||  ||   | | |    | |  |  |    | |||      
AGCAGCCCAAGAAGTGTCAGAGGGAAAACTAAATGATCATTTTCCGCTCGTCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAGgtaaggatcggtttatgtagcttcctgtcttctggtttgacgctgctttagttatatgcagatggaccttatttcgattccgatggaaatttgttctaaa-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19935949|gb|BQ080654.1|BQ080654
EST:     TTGTATGGCAAACTGGGAGTGGCACTCAAAGTAACATGAATGCTAACGAG                         GTTATTGCAAACCGAGCAGC
genomic: TTGTATGGCAAACTGGGAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagt ... atcttttcagGTTATTGCAAACCGAGCAGC
EST: gi|19934370|gb|BQ079400.1|BQ079400
EST:     TTGTATGGCAAACTGGGAGTGGCACTCAAAGTAACATGAATGCTAACGAG                         GTTATTGCAAAC
genomic: TTGTATGGCAAACTGGGAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagt ... atcttttcagGTTATTGCAAAC