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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGGCACAAGAAGTGGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagttactgcttcctactattatttttgagctgcacctaaccttaatgttctgcatataaatatgttatagctaacatttaaggatcttagatt...

Basic information

species Glycine max
transcript GLYMA02G01920.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g21950.1 (Oryza sativa), 5'ss of exon 3
AGCGGCACAAGAAGTGGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagttactgcttcctactattatttt-tgagctgcacctaaccttaatgttctgcatataaatatgttata-gctaacat---ttaaggatcttagatt
 || || || || || || || ||| |  || | ||||| ||||| || ||| | ||||||||||| |||||||| ||||| |||||||| || || ||||||  ||  || |   |    |||| |||| | |||  ||    ||   ||  |       |  ||||| || ||   || ||  |   |||| | | | |    
GGCTGCTCAGGAGGTTGCTGAAGGACAGTTAGATGACCACTTTCCACTTGTTATCTGGCAAACTGGGAGTGGCACACAAAGCAACATGAACGCCAATGAGgttttttt-ttcccattatgcactactattgtatgaattgtctatactgtttgttactaataattaaatgtggtacctgccaatgtgcgttaaagctttga----

upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 6
AGCGGCACAAGAAGTGGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagttac-tgcttcctactattatttttgagctgc-acctaaccttaatgttctgcatataaatatgttatagctaacatttaaggatcttagatt
 || ||  | || || || ||||||||  || | || || || || || ||| | |||||||||||||||||||| ||||| ||||||||||| || ||||||  |    ||| |      || | ||| |    | || | |   ||| | ||| ||       || |  |||| |    ||   |      |  || |  
GGCAGCTGAGGAGGTCGCAGAGGGAAAGTTAGATGATCACTTCCCACTTGTTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgttggtgtcctacatatccaatatttttactccaaatcttccataaaacgtcaattttaaagtagtatagctgttgtttggaatggtagtccctgctaaa--

upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 5
AGCGGCACAAGAAGTGGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagttactgcttcctactattatttttgagctgcacctaaccttaatgttctgcatataaatatgttatagctaacatttaaggatcttagatt-------
 || ||  | || || |  ||||||||  |  | || || || || || |||   |||||||||||||||||||| ||||| ||||||||||| || ||||||  |    |||  | ||| |    |||||||       | ||  || |||     |  || | ||  |  ||||| |    |||  | ||  |||          
GGCAGCTGAGGAGGTCGTAGAGGGAAAGTTGGATGATCACTTCCCACTTGTTACCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgttggtgtcctac-acatccaa----tatttttacttcaaatctt-ccataaaaacgtcaattttaaagtagtatagttgttgtttg-gaatggtagtccctgctaa

upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G010823_T01 (Zea mays), 5'ss of exon 3
AGCGGCACAAGAAGTGGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagttac-tgcttcctactattatttttgagctgcaccta--accttaatgttctgcatataaatatgttatagctaacatttaaggatcttagatt
 || ||  | || || || ||||||||  |  | || || || || || ||| | |||||||||||||||||||| ||||| ||||||||||| || |||||   |    |||   |    || | ||| ||   | || |    |  || | ||| ||       || |  |||| |   |   | |       | |     
GGCAGCTGAGGAGGTCGCAGAGGGAAAGTTGGATGATCACTTCCCACTTGTTATCTGGCAAACTGGCAGTGGCACACAAAGCAACATGAATGCCAATGAGgtcggtgtcctacacacccaatatttttacttcaaatcttccataaaaacatcaattttaaagtagtatagctgttttttttttgaatggcaatccctgc---

upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 4
AGCGGCACAAGAAGTGGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagttactgcttcctactattatttttgagctgcacctaaccttaatgttctgcatataaatatgttatagctaacatttaaggatcttagatt------------------------
||| || || ||||| || |||||||| || || || ||||| || || ||||| ||||||||||| ||||| ||||| ||||| ||||||||||| ||||| | ||  || | | ||   |    | | ||   | |     |     ||     || ||    ||    || | | | |  |||    || ||   ||                        
AGCTGCTCAGGAAGTAGCTGAGGGAAAGCTCAATGATCATTTCCCCCTTGTTGTCTGGCAAACTGGTAGTGGGACTCAGAGTAATATGAATGCTAATGAGgtaatttctttgcagtttttgagacatctgttgaggatctcattgtatatagctagctacaagagaaggctttct-gtttatgttttttcattttcttttggccttgttatttgctcttcacag

upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G50950.3 (Arabidopsis thaliana), 5'ss of exon 2
AGCGGCACAAGAAGTGGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagttactgcttcctactattatttttgagctgcacctaaccttaatgttctgcatataaatatgttatagctaacatttaaggatcttagatt
||| ||||||||||| || || ||||| || || || ||||| ||||| ||||||||||||||||| ||||| || || ||||| ||||||||||| |||||   |||  | |       |||  ||  |      || |||     ||    ||  || ||   || || ||  |           |  || | |   |
AGCTGCACAAGAAGTAGCAGAAGGAAAGCTCAATGATCATTTCCCTCTTGTTGTATGGCAAACTGGTAGTGGGACGCAGAGTAATATGAATGCTAATGAGgtaccttatatgcatggagatacattttgtacaatcctacacaagtgctaccagtggtggatcccaaaatatttcaatcggaggaacaatatttcatcgt

upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 4
AGCGGCACAAGAAGTGGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgtta--attagttactgcttcctactattatttttgagctgcacctaaccttaatgttctgcatataaatatgttatagctaacatttaagg---atcttagatt
||| || ||||||||| | |||||||||||||| || |||||||| |||||  |||||||||||||||||||||||||||||||||||||||| || ||||| |  ||  |||  ||   | | || |   || ||   || ||    | ||| |  | |||| ||  |  |  | | | |  |  |  |      |  || |  
AGCAGCCCAAGAAGTGTCAGAGGGAAAACTAAATGATCATTTTCCGCTCGTCATATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCCAATGAGgtaaggatcggtttatgtagcttcctgt--cttctggtttg-acgctgctttagttatatgcagatggaccttatttcgattccgatggaaatttgttctaaa--

upper sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S9_243V6.1 (Physcomitrella patens), 5'ss of exon 3
AGCGGCACAAGAAGTGGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgt--taattagttactgcttcctact-attatttttga--gctgcacctaaccttaatgttctgcatataaatatgttatagctaacatttaaggatcttagatt---------------------------------------------
||||||    ||||| || || |||||  | | |||||||||||| || ||||| |||||||| ||||| ||||||||||  ||||||||  |||| |||||  |    |  |  | || |   ||   || | ||||   |||  |   ||  | ||   |     ||  | | ||       | ||| |||  | |                                                    
AGCGGCTAGTGAAGTAGCTGAAGGAAAGTTGACCGACCATTTTCCACTTGTTGTTTGGCAAACGGGCAGCGGCACTCAAACCAACATGAACTCTAATGAGgtacttcccaacttgtactgcgagcttgataatattgattactgtgctctactgttattcgcctatcattcagaagtcgagaacatcatctaaataacaggtggcgtacaattcatttagtcattttggctctttcatgtgcttgaatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19347447|gb|BM892327.1|BM892327
EST:     TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAG                         GTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGT
genomic: TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagt ... atcttttcagGTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGT
EST: gi|151409155|gb|EV278963.1|EV278963
EST:     TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAG                         GTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAG
genomic: TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagt ... atcttttcagGTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAG
EST: gi|192310921|gb|FG998897.1|FG998897
EST:     TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAG                         GTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAG
genomic: TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagt ... atcttttcagGTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAG
EST: gi|298178427|gb|HO024162.1|HO024162
EST:     TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAG                         GTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAG
genomic: TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagt ... atcttttcagGTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAG
EST: gi|192322683|gb|FK015020.1|FK015020
EST:     TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAG                         GTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAG
genomic: TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagt ... atcttttcagGTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAG
EST: gi|192310776|gb|FK000290.1|FK000290
EST:     TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAG                         GTTATTGCAAACCGGGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAG
genomic: TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagt ... atcttttcagGTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAG
EST: gi|16281620|gb|BI944581.1|BI944581
EST:     TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAG                         GTTATTGCAAACCGAGCAGCAGAAATTCTTTGGCATAAGCGGTGTGCGAAG
genomic: TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagt ... atcttttcagGTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAG
EST: gi|209714881|gb|BW682046.1|BW682046
EST:     TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAG                         GTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAG
genomic: TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagt ... atcttttcagGTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAG
EST: gi|209717303|gb|BW659018.1|BW659018
EST:     TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAG                         GTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAG
genomic: TTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGgttaattagt ... atcttttcagGTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAG