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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagatttttgtctattggaatataacattgacacaattttatatcttaattcatagttatttacctgtcatttcacatttatcattccttttgcattcaatacttgattttggaaaattcccatag

Basic information

species Glycine max
transcript GLYMA02G01750.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01750.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g23740.2 (Oryza sativa), 5'ss of exon 3
GTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagatttttgtctattggaatataacattgacacaattttat-atcttaattcatagttatttacctgtcatttcacatttatcattccttttgcattcaatacttgattttggaaaattcccatag
||||| || ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||| ||||| || |||||||| || || ||||||||||||||   |   |  || |||    |  || ||   |||  |  |  |    || |  |  | |||||  | ||| | ||    | |                                            
GTTGATTGCGATGAGCACAAGAGTGTGTGCAGCAAGTATGGAGTTTCTGGGTACCCAACAATTCAATGGTTCCCCAAAGGATCCCTGGAGCCCAAAAAgtgaggc--tgcataacttttgttcaaatacttttgaacatctacaccagacaaaattttcatgattta--tatcactacaaccatgtag------------------------------------------

upper sequence: GLYMA02G01750.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os05g06430.1 (Oryza sativa), 5'ss of exon 3
GTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagatttttgtctattggaatataacattgacacaattttatatcttaattcatagttatttacctgtcatttcacatttatcattccttttgcattcaatacttgattttggaaaattcccatag
|||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||| || ||||| || ||||| ||  | || ||||| ||||||| | |  |   ||| |    ||    || | ||   ||||| | || |||   | | | |        | || | | | |||   ||                                        
GTTGACTGTGATGAGCACAAGAGTGTGTGCAGCAAGTATGGAGTTTCTGGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatacatgcttctttgttgattactcaatcactacattttctgtcgtaaagaacaatgaccc-----taatgttaaacttactgtttag-------------------------------------

upper sequence: GLYMA02G01750.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G128171_T04 (Zea mays), 5'ss of exon 3
GTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagatttttgtcta--ttggaatataacattgacacaattttatatcttaattc--atagttatttacctgtcatttcacatttatcattccttttgcattcaatacttgattttggaaaattcccatag
||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| || ||||| || ||||||||  | || ||||||||||||||       ||| ||  ||     ||| | ||     |      | | | |||||  | ||  |||    || ||  | |                                                   
GTTGATTGTGATGAGCACAAGAGTTTGTGCAGCAAGTATGGAGTTTCCGGGTATCCAACAATCCAATGGTTCCCGAAAGGATCCTTGGAGCCCAAAAAgtgagggagcgcgtgtttaaatttttccatatcctttgtttaccaagttctgtgaattctgacagaaattcctttggcaaattag--------------------------------------------------

upper sequence: GLYMA02G01750.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G159369_T01 (Zea mays), 5'ss of exon 3
GTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagatttttgtctattggaatataacattgacacaattttatatcttaattcatagttatttacctgtcatttcacatttatcattccttttgcattcaatacttgattttggaaaattcccatag
|||||||||||||||||||||||| | |||||||| |||||||| ||||||||||| |||||||| |||||||| ||||| || || || || || ||||||| |  ||  |  ||  ||   | ||   |  | | |||||| |||  | ||  ||| |  |  | ||    ||   ||                                                 
GTTGACTGTGATGAGCACAAGAGTGTATGCAGCAAGTATGGAGTTTCTGGGTACCCCACAATTCAATGGTTTCCCAAAGGTTCCCTGGAGCCAAAGAAgtgagaa--ttcataacttctgttttgtactttccaga-aattttttattgtgataaataatgttaaatctactcttgtgcag------------------------------------------------

upper sequence: GLYMA02G01750.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G47470.3 (Arabidopsis thaliana), 5'ss of exon 3
GTTGACTGTGATGAGCACAAGAGTTTGTGCAGCAAATATGGAGTCTCTGGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagatttttgtctattggaatataacattgacacaattttatatcttaattcatagttatttacctgtcatttcacatttatcattccttttgcattcaatacttgattttggaaaattcccatag
||||| ||||||||||| |||||| | || |  |||||||| ||   ||| |||||||| |||||||||||||| |||||||||||||||||  ||||||    |   ||||  || ||    |||    |  |  ||  ||     |||| ||  | | | | |     | ||      |  || |||   ||||  ||   |  || || ||    |||        
GTTGATTGTGATGAGCAAAAGAGTGTCTGTACTAAATATGGTGTTAGTGGATACCCAACCATTCAGTGGTTTCCTAAAGGATCTCTTGAACCTCAAAAgt----atgctttttactgtt----tattctctctaagcagatta----cttatttggtggatgtcttttgtttatagatagtgaatgattttgtttgttttttctg-ttcatcttattgaatag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193602208|gb|FK558877.1|FK558877
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAA                         GTATGAAGGGCCACGCACTGCTGATTCACTTGCTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGATTCACTTGCTGAGTTTGTAAATACGGA
EST: gi|193350926|gb|FK314206.1|FK314206
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAA                         GTATGAAGGGCCACGCACTGCT
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCT
EST: gi|208324590|gb|GE120963.1|GE120963
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAA                         GTATGAAGGGCCACGCACTGCTGATTCACTTGCTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGATTCACTTGCTGAGTTTGTAAATACGGA
EST: gi|192333634|gb|FK026879.1|FK026879
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAA                         GTATGAAGGGCCACGCACTGCTGATTCACTTGCTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGATTCACTTGCTGAGTTTGTAAATACGGA
EST: gi|193481517|gb|FK446440.1|FK446440
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAAGCCAAAAA                         GTATGAAGGGCCACGCACTGC
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGC
EST: gi|208127487|gb|GD923931.1|GD923931
EST:     GGGTACCCAACAATTCAGTGGTT-CCAAAAGGATCTCTTGAACCCAAAAA                         GTATGAAGGGCCACGCACTGCTGATTCACTTGCTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGATTCACTTGCTGAGTTTGTAAATACGGA
EST: gi|163921267|gb|EH038909.1|EH038909
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAA                         GTATGAAGGGCCACGCACTGCTGATTCACTTGCTGAGTTTGTAAATAC---
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGATTCACTTGCTGAGTTTGTAAATACGGA
EST: gi|207758702|gb|GD728748.1|GD728748
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGGTCTCTTGAACCCAAAAA                         GTATGAAGGGCCACGCACTGCTGATTCACTTGCTAGAAGTTTAAGTAAATA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGATTCACTTGCT-GA-GTTT--GTAAATA
EST: gi|207759728|gb|GD734843.1|GD734843
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAA                         GTATGAAGGGCCACGCACTGCTGATTCACTTGCTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGATTCACTTGCTGAGTTTGTAAATACGGA
EST: gi|193465544|gb|FK432477.1|FK432477
EST:     GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAA-                         GTATGAAGGGCCACGCACTGCTGATTCACTTGCTGAGTTTGTAAATACGGA
genomic: GGGTACCCAACAATTCAGTGGTTTCCAAAAGGATCTCTTGAACCCAAAAAgtgaggagat ... attcccatagGTATGAAGGGCCACGCACTGCTGATTCACTTGCTGAGTTTGTAAATACGGA