Sequence
atgc intronic sequence ATGC exonic sequenceGGTTCTGAGACATTGGCTTCCTGGCAAGCAAACCTACTTTTTGAGCCGATTAAATTTGAGgtaattgtctatattgcatactaaagtagtttttctcatgtcattcttgttataggggaatttcattctttttacggttataaataaatacttttgaatctttcttattgtgtatctaattatctatcctgaaattgacatattgatgtacacatttttgcccag
Basic information
species | Glycine max |
transcript | GLYMA02G01720.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G01720.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G02660.1 (Arabidopsis thaliana), 5'ss of exon 3
GGTTCTGAGACATTGGCTTCCTGGCAAGCAAACCTACTTTTTGAGCCGATTAAATTTGAGgtaattgtctatattgcatactaaagtagtttttctcatgtcattcttgttataggggaatttcattctttttacggttataaataaatacttttgaatctttcttattgtgtatctaattatctatcctgaaattgacatattgatgtacacatttttgcccag
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GGATCTGAATCTCTAGCTTCTTGGCAAGCAAATTTACTCTTTGAGCCTATTGAATTTGAGgtatttgttctt------tacaa----------tccca-actattttggaaacagaaatgtgccaa-cttataac--ttacaaagacctgtttttgatctattag------------------------------------------------------------
upper sequence: GLYMA02G01720.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0005g01240.t01 (Vitis vinifera), 5'ss of exon 4
GGTTCTGAGACATTGGCTTCCTGGCAAGCAAACCTACTTTTTGAGCCGATTAAATTTGAGgtaattgtctatattgcatactaaagtagtttttctcatgtcattcttgttataggggaatttcattctttttacggttataaataaat-acttttgaatctttcttattgtgta-tctaattatctatcctgaaattgacatattgatgtacacatttttgcccag
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GGGTCTGAGTCACTAGCATCATGGCAAGCAAATCTACTGTTTGAGCCGATTAGTTTTGAGgtaattttccctttcac---------tagtttctactgtttggtgagttttgagttggtttcggagcatgaagatgaatgtaaaaaatccaaatctaaggttgtcttatagaggaatgtggtaaatgtttttgctatag----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16997140|gb|BM086512.1|BM086512EST: CATTGGCTTCCTGGCAAGCAAACCTACTTTTTGAGCCGATTAAATTTGAG GGTTTAGATGTACTTGTGCACAGAGGTATATACGAGGCTGCTAAAGGGATA
genomic: CATTGGCTTCCTGGCAAGCAAACCTACTTTTTGAGCCGATTAAATTTGAGgtaattgtct ... ttttgcccagGGTTTAGATGTACTTGTGCACAGAGGTATATACGAGGCTGCTAAAGGGATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTCTGAGACATTGGCTTCCTGGCAAGCAAACCTACTTTTTGAGCCGATTAAATTTGAGgtaattgtctatattgcatactaaagtagtttttctcatgtcattcttgttataggggaatttcattctttttacggttataaataaatacttttgaatctttcttattgtgtatctaattatctatcctgaaattgacatattgatgtacacatttttgcccag
- - - - - - - - - - - - AAGCAA