1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCCCAAGTGAACTTCAAGAGGCTATCACTCACTGACATCAAGATCGATATTAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaagttttcacggagaaattgttattttattggaagcatttctttttgttcatcagtttgttttctcattgaacag
species | Glycine max |
transcript | GLYMA02G00680.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCEST: gi|31474545|gb|CD416573.1|CD416573
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCEST: gi|7639446|gb|AW733769.1|AW733769
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCEST: gi|41146190|gb|CK606401.1|CK606401
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCEST: gi|192299057|gb|FG990385.1|FG990385
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCEST: gi|31309420|gb|CD394623.1|CD394623
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCEST: gi|151405848|gb|EV275663.1|EV275663
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: TAAGAGGATCCCCAAGAAGAAGGTTCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCEST: gi|192326906|gb|FK019198.1|FK019198
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCEST: gi|192310170|gb|FK000678.1|FK000678
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: TAAGAGGATTCCCAAGAAGAAGGATTTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCEST: gi|58023951|gb|CX710692.1|CX710692
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCEST: gi|209701605|gb|BW655866.1|BW655866
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCEST: gi|31461690|gb|CD403718.1|CD403718
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATGGTGCEST: gi|298169651|gb|HO021011.1|HO021011
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCEST: gi|254348775|gb|GR852454.1|GR852454
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCEST: gi|192310169|gb|FK000677.1|FK000677
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: TAAGAGGATTCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCEST: gi|209701606|gb|BW655867.1|BW655867
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCEST: gi|298171857|gb|HO021449.1|HO021449
genomic: TAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGC
EST: GATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTG ATGTTAAGAACAGATGGGAGAAGAGTTCTTGGTGGCAGAAAACTGATTGTG
genomic: GATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaa ... cattgaacagATGTTAAGAACAGATGGGAGAAGAGTTCTTGG-GGCAGAAAACTGATTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCAAGTGAACTTCAAGAGGCTATCACTCACTGACATCAAGATCGATATTAAGAGGATCCCCAAGAAGAAGGATCTCATTCAAGCCATGGAGGCTGCTGgttggtacaagttttcacggagaaattgttattttattggaagcatttctttttgttcatcagtttgttttctcattgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT