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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGAGCTTGGATTTACATTCTCCTTTCCTGTGAAACAAATGTCTGTTTCTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGGAAATATGgttagtcggacgactttcaagcagtttctacgtgaaagcatgtattgtgatagatatcaattctcatttaacattcatcataaaacttgatcactaattt...

Basic information

species Glycine max
transcript GLYMA01G43650.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43650.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0061g00040.t01 (Vitis vinifera), 5'ss of exon 3
AAGGGAGCTTGGATTTACATTCTCCTTTCCTGTGAAACAAATGTCTGTTTCTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGGAAATATGgttagtcggacgactttcaagcagtttctacgtgaaagcatgtattgtgatagatatcaattctcatttaacattcatcataaaacttgatcactaattt---
|||||| ||||| ||||||||||| ||||||||||| ||||  |||||||| || |||||| |||| |||||||||||| | |||||| ||  | | |||||||||  ||| |  ||| || |  || |||     |   ||       | |  | | || | | ||  ||    | | ||| |  |   |    || ||   
AAGGGAACTTGGCTTTACATTCTCTTTTCCTGTGAAGCAAACATCTGTTTCATCAGGCATTCTAATTAAATGGACAAAAAGATTTTCCGTCAAAGACATGgttagtgagacaatgttctagtaacttatactcttgat--tgctccacaacaattttaaactttaatggaagggac-tgatagagttgttttgaaaagttcct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7283479|gb|AW596086.1|AW596086
EST:     CTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGGAAATATG                         GTAGGAAGAGATGTTGCAACA
genomic: CTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGGAAATATGgttagtcgga ... ttgttgtcagGTAGGAAGAGATGTTGCAACA
EST: gi|23061491|gb|BU578462.1|BU578462
EST:     CTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGGAAATATG                         GTAGGAAGAGATGTTGCAACA
genomic: CTTCTGGCATTTTAATCAAATGGACAAAAGGGTTTTCCATCGGAAATATGgttagtcgga ... ttgttgtcagGTAGGAAGAGATGTTGCAACA