Sequence
atgc intronic sequence ATGC exonic sequenceTCCTGATCTAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGgttggtattttggaatttgatgtttcggcttctcttaacctttttattttgtgttatcaacattttgtgcttcagccttcagtgatgagatttttattca...
Basic information
species | Glycine max |
transcript | GLYMA01G43520.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G43520.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G129431_T01 (Zea mays), 5'ss of exon 3
TCCTGATCTAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGgt-tggtattttggaatttgatgtttcggcttctcttaacctttttattttgtgttatcaacattttgtgcttcagccttcagtgatgagatttttattca--
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TCCTGACCCAGAAGCTAAGGAGCAAGTTGAAATGATACAATGCTCTATATGTGAGGACTGGTTTCATGGGGATCATATTGGTCTTAACTCTATTGAAGAGgtattatattttccagtaccttaaatgcgatcatat-atgttaggtgctttttgtgttctgattcctgtgtgtttgcct--agttgcatcacctgtatctgca
upper sequence: GLYMA01G43520.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G23860.1 (Arabidopsis thaliana), 5'ss of exon 4
TCCTGATCTAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGgttggtattttggaatttgatgtttcggcttc-tcttaacctttttattttgtgttatcaacattttgtgcttca-gccttcagtgatgagatttttattca
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------------TGTGGAAGAACAAGTAGAGATGATTCAGTGTTGTCTCTGTGAGGATTGGTTTCATGAGGAGCATCTCGGTCTCACACCTTCAGACAGTGTTGGTAGCCAGg--tttgtggccagtgcttaatcttgttgtttacgattgattttttttgttgttggcgcttagtgcaatttgttatgtgatgttaacag-
upper sequence: GLYMA01G43520.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g01440.t01 (Vitis vinifera), 5'ss of exon 3
TCCTGATCTAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGgttggtattttggaatttgatgtttcggcttctcttaacctttttattt--tgtgttatcaacattttgtgcttcagccttcagtgatgagatttttattca-
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TCCTGATCCAGACATTGAAGAACAAGAAGAGATGATACAGTGCTGTATCTGTGAGGACTGGTTCCATGAGGAGCATCTTGGCCTTGAGTCTTCTGATGAGgttagtttctttgacttctcctatttggctgttgcctgggttctcatttgtcatgtttttggtatattgtatt---gttattcatgtcatgctttggcataaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17153540|gb|BM143473.1|BM143473EST: CTTCTGCGGAG ATTCCCAAAGATGATGAAGGAGAGCCAACGTATGAGGAATTCATATGTAAG
genomic: CTTCTGCGGAGgttggtattt ... tatacctcagATTCCCAAAGATGATGAAGGAGAGCCAACGTATGAGGAATTCATATGTAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCTGATCTAGATGCTGAAGAACAAGTAGAGATGATACAGTGCTGTCTATGTGAGGACTGGTTTCATGAGGAGCATCTTGGTCTTGAGTCTTCTGCGGAGgttggtattttggaatttgatgtttcggcttctcttaacctttttattttgtgttatcaacattttgtgcttcagccttcagtgatgagatttttattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA