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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGCCTTCAATGATGTTTACATTGTTTATGAATTGATGGACACTGATCTTCATCAGATTATTCGTTCTGACCAACCTCTTAACGATGACCACTGTCAGgtttccttctattcatattctatacagaaaaaaatctttcaagcgattaaatcgacacatgtattttaaatatatgaaatagattcattcttattgcatgaggggtgttgttaagttttgatttgttcttttcttttgaaattaagcttggtattgatgtttcgtgaaacttgtgcag

Basic information

species Glycine max
transcript GLYMA01G43100.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g38950.1 (Oryza sativa), 5'ss of exon 3
GGATGCCTTCAATGATGTTTACATTGTTTATGAATTGATGGACACTGATCTTCATCAGATTATTCGTTCTGACCAACCTCTTAACGATGACCACTGTCAGgtttccttctatt--catattctatacagaaaaaaat--ctttcaagcgat-taaatcgaca----catgtattttaaatatatgaaatagattcattcttattgcatgaggggtgttgttaagttttgatttgttcttttcttttgaaattaagcttggtattgatgtttcgtgaaacttgtgcag
 ||   ||| ||||||||||||||||||| ||| |||||||| |||||||| |||||||| || || ||  | |||||  | |  ||||||||||| |||||||  | ||     | | | || | | |||| |  |  ||| ||    || || |  || |    |||| |  ||     | ||   | | |  ||  ||  | |||        |  || || ||    || |  | ||  | ||   | |   |    | |||  | |  || |     |||||
AGACAACTTTAATGATGTTTACATTGTTTCTGAGTTGATGGATACTGATCTCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAGgtttgttgcttccagcttgtgctttgctgaaacattttgcttgcagaaaatctagacagagatttccatgcaccttgttcctttgg--tcgctatatgttttcttcatcctatccatatttcagcttaacattctcttgtttatctggtttaataatcacaagtgacatgttttgcat----tgcag

upper sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g06060.1 (Oryza sativa), 5'ss of exon 3
GGATGCCTTCAATGATGTTTACATTGTTTATGAATTGATGGACACTGATCTTCATCAGATTATTCGTTCTGACCAACCTCTTAACGATGACCACTGTCAGgtttccttctattcatattctatacagaaaaaaatctttcaagcgattaaatcgacacatgtattttaaatatatgaaatagattcattcttattgcatgaggggtgttgttaagttttgatttgttcttttcttttgaaattaagcttggtattgatgtttcgtgaaacttgtgcag
|||   |||||||||||| |||||||| |||||  | ||||||||||||||||| ||  || |||| ||  |||| || || |  ||||| ||||||||||| ||  ||||||| | ||   | | | |  ||| | |     || |   ||| |   ||  | || ||  |    | |    |   || |   | |||         | | |    |    || || |||| ||||| |                                      
GGAGAACTTCAATGATGTCTACATTGTCTATGAGCTCATGGACACTGATCTTCACCACCTTCTTCGATCAAACCAGCCACTAACAGATGATCACTGTCAGgtctcactctattcttgtttgtttctgtattaaaccatctcttcgtt---atccatcaattcaattcaagcactaaataactgtaagttttctctccat---------tctaacacatccccttcttttttttttttgcag-------------------------------------

upper sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G11330.1 (Arabidopsis thaliana), 5'ss of exon 3
GGATGCCTTCAATGATGTTTACATTGTTTATGAATTGATGGACACTGATCTTCATCAGATTATTCGTTCTGACCAACCTCTTAACGATGACCACTGTCAGgtttccttctattcatattctatacagaaaaaaatctttcaagcgatta-aatcgacacatgtattttaaatatatgaaatagattcattcttattgcatgaggggtgttgttaagttttgatttgttcttttcttttgaaattaagcttggtattgatgtttcgtgaaacttgtgcag
||| |  |||  ||||||||| || |||| ||| || ||||| ||||||||||||||||||||||| ||  ||||| || | || ||||| || ||||||||    || |  |  | | |||||    | |  ||  || |    || | ||  ||  ||  | || |   | |                                                                                                         
GGAAGATTTCGTTGATGTTTATATAGTTTTTGAGTTAATGGATACTGATCTTCATCAGATTATTCGATCAAACCAATCTTTGAATGATGATCATTGTCAGgtacggtttt--tactctgctatatttgatactatggttgatttaatcacaagtgattcactttttcttcttttgcag-----------------------------------------------------------------------------------------------------

upper sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g00270.t01 (Vitis vinifera), 5'ss of exon 3
GGATGCCTTCAATGATGTTTACATTGTTTATGAATTGATGGACACTGATCTTCATCAGATTATTCGTTCTGACCAACCTCTTAACGATGACCACTGTCAGgtttccttctattcatattctat-acagaaaaaaatcttt-caagcgattaaatcgacacatgtattttaaatatatgaaatagattcattcttattgcatgaggggtgttgttaagttttgatttgttcttttcttttgaaattaagcttggtattgatgtttcgtgaaacttgtgcag
|||  | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| | || | |||||| || |||||||| ||   ||    ||  |   | |    |     || ||  ||   || |  || |  | ||||  |||  |  |   | |   || | | || |  | | |                                                                             
GGAAACTTTCAATGATGTCTACATTGTTTATGAATTGATGGACACTGATCTTCATCAGATCATTTGTTCTAACCAATCCCTCACCGATGATCATTGTCAGgtatctcactgactattgttggtcatcttaccttgtcattataattaatgagctctaaccttgtaacttatctgcaatgagtc--ttgactgttgtc-cttaa-----------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408614|gb|EV278422.1|EV278422
EST:     TTCATCAGATTATTCGTTCTGACCAACCTCTTAACGATGACCACTGTCAG                         TACTTTTTATATCAGCTGTTACGGGGGCTGAAATATGTGCATTCTGCTAAT
genomic: TTCATCAGATTATTCGTTCTGACCAACCTCTTAACGATGACCACTGTCAGgtttccttct ... acttgtgcagTACTTTTTATATCAGCTGTTACGGGGGCTGAAATATGTGCATTCTGCTAAT
EST: gi|18712582|gb|BM522669.1|BM522669
EST:     TTCATCAGATTATTCGTTCTGACCAACCTCTTAACGATGACCACTGTCAG                         TACTTTTTATATCAGCTGTTACGGGGGCTGAAATATGTGCATTCTGCTAAT
genomic: TTCATCAGATTATTCGTTCTGACCAACCTCTTAACGATGACCACTGTCAGgtttccttct ... acttgtgcagTACTTTTTATATCAGCTGTTACGGGGGCTGAAATATGTGCATTCTGCTAAT