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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATCATGGTGGATCGAGGCAACTGCACGTTCACAAAAAAGGCAAATATTGCACAGAATGCTAATGCTTCAGCCATCCTCATCATAAATAACCAAAAAGgtaaaaattccgttgtccttctggctcttattttttttgggtagttgggtttttgatagttgaagaagttgcttcacttttgtgttgggtgggtcatgtctagtatatacacttttttatttctcttttcatgtcaaatttgtttttgttgtttgcag

Basic information

species Glycine max
transcript GLYMA01G42940.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699604|gb|BW655710.1|BW655710
EST:     TGCACAGAATGCTAATGCTTCAGCCATCCTCATCATAAATAACCAAAAAG                         AACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACA
genomic: TGCACAGAATGCTAATGCTTCAGCCATCCTCATCATAAATAACCAAAAAGgtaaaaattc ... ttgtttgcagAACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACA
EST: gi|209729790|gb|BW658595.1|BW658595
EST:     TGCACAGAATGCTAATGCTTCAGCCATCCTCATCATAAATAACCAAAAAG                         AACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACA
genomic: TGCACAGAATGCTAATGCTTCAGCCATCCTCATCATAAATAACCAAAAAGgtaaaaattc ... ttgtttgcagAACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACA
EST: gi|213614822|gb|DB956958.1|DB956958
EST:     TGCACAGAATGCTAATGCTTCAGCCATCCTCATCATAAATAACCAAAAAG                         AACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACA
genomic: TGCACAGAATGCTAATGCTTCAGCCATCCTCATCATAAATAACCAAAAAGgtaaaaattc ... ttgtttgcagAACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACA
EST: gi|298165710|gb|HO008681.1|HO008681
EST:     TGCACAGAATGCTAATGCTTCAGCCATCCTCATCATAAATAACCAAAAAG                         AACTGTACAAGATGGTTTGCGAACCCGATGAAACTGATTTGAACATACACA
genomic: TGCACAGAATGCTAATGCTTCAGCCATCCTCATCATAAATAACCAAAAAGgtaaaaattc ... ttgtttgcagAACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACA
EST: gi|192315508|gb|FK009688.1|FK009688
EST:     TGCACAGAATGCTAATGCTTCAGCCATCCTCATCATAAATAACCAAAAAG                         AACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACA
genomic: TGCACAGAATGCTAATGCTTCAGCCATCCTCATCATAAATAACCAAAAAGgtaaaaattc ... ttgtttgcagAACTGTACAAGATGGTTTGCGAACCTGATGAAACTGATTTGAACATACACA