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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCTAGCCACTCCTACGGCTGTTATGGTCGGTACTGGAGTTGGTGCAACACAAGGTGTGTTGATCAAAGGGGGGCAAGCATTAGAAAATGCACACAAGgtcagtaagtggcgttaaacattaactgctctataggtttcatttatagtagagaaattagaacaagtacacttttttgttacatggtgaaattcatatt...

Basic information

species Glycine max
transcript GLYMA01G42800.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G42800.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G63440.1 (Arabidopsis thaliana), 5'ss of exon 3
AGGCCTAGCCACTCCTACGGCTGTTATGGTCGGTACTGGAGTTGGTGCAACACAAGGTGTGTTGATCAAAGGGGGGCAAGCATTAGAAAATGCACACAAGgtcagta-agtg-gcgttaaac--attaactgctctataggtttcatttatagtagaga----aattagaa---caagtacacttttttgtt-acatggtgaaattc-atatt----------------
 || || || ||||| || ||||||||||| |||||||| ||||||||| | ||||||||| |||| || || || |||||  ||||||  ||||||||||| |||  |||| ||  |||     |  |  ||| | ||   ||  | ||  ||| | |    | | ||     |  |  || || |||  | | |||||||||    | | |                
TGGGCTGGCTACTCCAACTGCTGTTATGGTTGGTACTGGGGTTGGTGCATCCCAAGGTGTGCTGATAAAGGGTGGCCAAGCCCTAGAAAGAGCACACAAGgttagtttagtgtgcagtaacttggtctatggctttgtaaacttactatactgtatatactttactcaggttctctggatcatttcttttctgaaatggtgaaacctgacagtttcaatgacggtgtag

upper sequence: GLYMA01G42800.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 3
AGGCCTAGCCACTCCTACGGCTGTTATGGTCGGTACTGGAGTTGGTGCAACACAAGGTGTGTTGATCAAAGGGGGGCAAGCATTAGAAAATGCACACAAGgtcagtaagtggcgttaaacattaactgctctataggtttcatttatagtagagaaattagaacaagtacacttttttgttacatggtgaaattcatatt----
|||||| || |||||||| || || ||||| |||||||| ||||| ||  | || |||||  | |||||||| || ||||||||||||| |||||| |||||||||  |||    | | | ||   || | ||  | ||| |   | |  ||| |    |||| ||| |  |||     | | |   | || ||     |    
AGGCCTTGCAACTCCTACTGCCGTCATGGTTGGTACTGGTGTTGGGGCCTCTCAGGGTGTCCTCATCAAAGGCGGTCAAGCATTAGAAAGTGCACATAAGgtcagtgtgtgaaactcatc-ttgcatg-tttac-gttttaaggaaaaacagacatcggagaataag-attcttaagcttaaaaaactaaactttgaggtttta

upper sequence: GLYMA01G42800.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 9
AGGCCTAGCCACTCCTACGGCTGTTATGGTCGGTACTGGAGTTGGTGCAACACAAGGTGTGTTGATCAAAGGGGGGCAAGCATTAGAAAATGCACACAAGgtcagtaagtggcgttaaacattaactgctctataggtttcatttatagtagagaaattagaacaagtacacttttttgttacatggtgaaattcatatt---
|||||| || |||||||| ||||||||||| || || || ||||||||  | || || ||  | |||||||| || ||||||||||||| |||||| |||||||||| ||||   ||| |||      || |  |  |||       || | | |  || |   | | | | | ||  |  | |   |  |  |   ||    
AGGCCTTGCAACTCCTACTGCTGTTATGGTTGGCACCGGTGTTGGTGCTTCTCAGGGAGTCCTCATCAAAGGCGGTCAAGCATTAGAAAGTGCACATAAGgtcagtatgtgg---taatcatcttgcccttttcaaattttcaaggaagaacaaatcttggggaatgaagattcttgagcgaaaacctccatgttcaatcaca

upper sequence: GLYMA01G42800.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0025g03640.t01 (Vitis vinifera), 5'ss of exon 2
AGGCCTAGCCACTCCTACGGCTGTTATGGTCGGTACTGGAGTTGGTGCAACACAAGGTGTGTTGATCAAAGGGGGGCAAGCATTAGAAAATGCACACAAGgtcagtaagtggcgttaaacattaactgctctataggtttcatttatagtagagaaattagaacaagtacacttttttgttacatggtgaaattcatatt-------
 ||||| || |||||||| ||||||||||| |||||||| ||||| ||  | || |||||  | |||||||| || ||||||||||||| |||||| |||||||||||||||  || | | |   || |||||     ||  |  | |  ||  |   |||   || ||   || ||     ||     || | | || |       
GGGCCTTGCAACTCCTACTGCTGTTATGGTTGGTACTGGTGTTGGAGCTTCTCAGGGTGTCCTCATCAAAGGCGGCCAAGCATTAGAAAGTGCACATAAGgtcagtaagtggtattcatcttgcccttctcta----ctttctaaagaaaagcaatcctaggggaattaagattcttgaactca---aaaagtccgtacttaaccac