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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGACTTGGTTAAATGTGAAGTTATTGATGGTGGTGAACTGAAATCTAGGCGTCATTTAAATGTCCGTGGAAAAAGTGCAACACTTCCTTCCATAACTGgtatagttctgttatattcgttgttgacactttgcatgggtattaagtttcagttattcacttgtagctggatactctcttagtatgcaagtgcatttgacaattttatgctctgttaccttatgtttcaacttcacag

Basic information

species Glycine max
transcript GLYMA01G40860.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G40860.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g42100.1 (Oryza sativa), 5'ss of exon 4
AAAGACTTGGTTAAATGTGAAGTTATTGATGGTGGTGAACTGAAATCTAGGCGTCATTTAAATGTCCGTGGAAAAAGTGCAACACTTCCTTCCATAACTGgtatagttctgttatattcgttgttgacactttgcatgggtattaagtttcagttattcacttgtagctggatactctcttagtatgcaagtgcatttgacaattttatgctctgttaccttatgtttcaacttcacag
   ||   |||||| ||||||||  |||||||||| ||||||||||| ||||| ||  |||||||||||||||| ||||| ||  | || || ||      || || || |||  |||  |   | |||  ||  |       ||  |   |||||| |||  |  |||| | |  ||  |  | |   ||                                                
GCTGATACGGTTAAGTGTGAAGTAGTTGATGGTGGGGAACTGAAATCAAGGCGCCACCTAAATGTCCGTGGAAAGAGTGCGACTTTGCCATCTAT------TACAGgtcggttg-atttctccataacatgttcaac---ctctagat---agttatgcacaagatgctg-acatccttctgctttaacag------------------------------------------------

upper sequence: GLYMA01G40860.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0012g01170.t01 (Vitis vinifera), 5'ss of exon 4
AAAGACTTGGTTAAATGTGAAGTTATTGATGGTGGTGAACTGAAATCTAGGCGTCATTTAAATGTCCGTGGAAAAAGTGCAACACTTCCTTCCATAACTGgtatagttctgttat--------------------attcgttgttgacactttgcatgggtattaagtttcagttattc-acttgtagctggatactctcttagtatgcaagtgcatttgacaattttatgctctgttaccttatgtttcaacttcacag
|| || |||||||| ||  |||| |||||||||||||| |||||||| |||||||| || ||||| ||||||||||||||||| || ||||| ||||| |||    || |||| |                    |||   ||||   | ||| || |    | |  |     || ||  |||| ||  ||  ||||  | |  |||   | |       |  ||   ||  | |   |       | |||  |  ||||
AAGGATTTGGTTAAGTGCCAAGTAATTGATGGTGGTGAGCTGAAATCAAGGCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAGgttatcttttgttcttatgttttttctaataggtgattttctgtttctattttccacgaagttgatatgatgtttcttttacttttatttgtctacttacgtgttatttgaattgtaaaaaatatccaatcttttcccattactcatgtcatttcaacag