Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACTCCCTATATTGTAAAATATGGCAAACATCCAGTCAATGGAGCTCCTCTCAAGCATCAGGATCTCATTCCACTAACTTTCCACAAGAATTCAGAAGgttatcatcttttttttctttctaatcattttgttattgctgaaaacttaaaaagctaatgtgtatactgtaatattttgccaaaatggttcagtcaaca...

Basic information

species Glycine max
transcript GLYMA01G40170.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G40170.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0129g00040.t01 (Vitis vinifera), 5'ss of exon 3
ATAACTCCCTATATTGTAAAATATGGCAAACATCCAGTCAATGGAGCTCCTCTCAAGCATCAGGATCTCATTCCACTAACTTTCCACAAGAATTCAGAAGgt-tatcatcttttttttctttctaatcattttgt-tattgctgaaaacttaaaaagctaatgtgtatactgtaatattttgccaaaatggttcagtcaaca
|||| ||| || |||   || | ||| |||||||| || | ||| ||||| ||||||||  |||||||||||||||| |||||||||||||||||||| ||| |||   ||||||    |||    || |   || | |   |    || | || | ||  | | ||| || | |  | | |     ||   |   | ||  
ATAATTCCGTACATTAGGAAGTTTGGTAAACATCCTGTTACTGGGGCTCCACTCAAGCAAGAGGATCTCATTCCACTTACTTTCCACAAGAATTCAGATGgtatatttcctttttcaatttttgtttcttgaagtgtgtcaattttgaccttaataactcct-tctatgctttcacttatcggttgtattagt-gttgaatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317653|gb|GR826637.1|GR826637
EST:     TCTCAAGCATCAGGATCTCATTCCACTAACTTTCCACAAGAATTCAGAAG                         GAGAATATCATTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACACATA
genomic: TCTCAAGCATCAGGATCTCATTCCACTAACTTTCCACAAGAATTCAGAAGgttatcatct ... cattccgcagGAGAATATCATTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACACATA