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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCAGCAAGCTGGTGAAAGGAAGGCCACTGGATAACCTCGAGTTCATGCAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAAgtaatattattaatcctaatttaatttcatttcattcgcatacatttgtcgttgtagatttctctttgttttaaaattctctgaaattgactttttcgcg...

Basic information

species Glycine max
transcript GLYMA01G39720.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39720.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g35580.1 (Oryza sativa), 5'ss of exon 3
AGGTCAGCAAGCTGGTGAAAGGAAGGCCACTGGATAACCTCGAGTTCATGCAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAAgtaatat------tattaatcctaatttaatttcatttc--attcgcatacatttgtc-gttgtagatttctctttgttttaaaattctctgaaattgactttttcgcg-------------------------------------
| || | ||||||    || |||||||| || || || || || ||||||||||||||||| |||||||| ||||| ||||||   ||| |   | ||| ||||| |      || || ||   |     |   ||||   ||| |      |||||| | |  | | |||| |||||   | ||||   |  |||||    | |                                         
AAGTGAACAAGCTTACCAAGGGAAGGCCCCTTGACAATCTGGAATTCATGCAATGGATGAAGCGATACTGTGATTCGGTCAATGGAGGCTTCATGAACAGgtaatctgttacatactattctctaacctgtccaatttttgatttgtgagattttgtcaggttcaaaattctgtttgtg--acaatttcatttaattgctcgtctaaaaccttatgtattgctgttctttgtgaattgattcacag

upper sequence: GLYMA01G39720.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G163409_T02 (Zea mays), 5'ss of exon 3
AGGTCAGCAAGCTGGTGAAAGGAAGGCCACTGGATAACCTCGAGTTCATGCAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAAgtaat-attattaatcctaatttaatttcatttcattcgcatacatttgtcgttgtagatttctcttt-gttttaaaattctctgaaattgactttttcgcg-----------------------------------------------------------------------
|||| | ||||||  | ||||||||||| || || || || ||||||||||| |||||||||||||| || ||||||||||||   ||| |   |  || ||||| | |        || |  ||||| |     |  ||  | ||  | | |||   ||| |||  | ||  || | |||  |       ||                                                                                
AGGTGAACAAGCTTATCAAAGGAAGGCCCCTTGACAATCTGGAGTTCATGCAGTGGATGAAACGATATTGTGATTCTGTCAATGGTGGCTTCATGAGCAGgtaatcactgacctgtttactaaaattttagactgta-gctcagataaggctttgagcattcctcagtagtaatatatttcgtttgtcgccacacaactataagcaaaccgtattaaaagaacatttctgaatgtttacatttcattgtcctgttttttttttacgtacacag

upper sequence: GLYMA01G39720.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv07s0129g01080.t01 (Vitis vinifera), 5'ss of exon 3
AGGTCAGCAAGCTGGTGAAAGGAAGGCCACTGGATAACCTCGAGTTCATGCAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAAgtaat----attattaatcctaatttaat--ttcatttcattcgcatacatttgtcgttg-tagatttctctttgttttaaaattctctgaaattgactttttcgcg
|||| |||||||| ||||||||||| || || ||||| || ||||||||||||||||||||  ||||||| || || || |||   ||||||    ||| |||||    |  || | | ||  ||| ||  | ||||||||||  || | || |  |    |  |||||| ||| |  |    || |    |||||  |        
AGGTAAGCAAGCTTGTGAAAGGAAGACCTCTTGATAATCTGGAGTTCATGCAATGGATGAAGAGATACTGTGACTCGGTTAATGGAGGCCTTTTAAACAGgtaattgcaaccatgatttctctttttatgttccatttcattc--attctttagatgccccttcatttctttttctcattgggttgttcagaattgtttgaa-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393328|gb|EV263203.1|EV263203
EST:     CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAA                         TTATAATCCTCTGGAGAGGAGAGAGGTTAGCAAAGGTGGAAGAGAAACGAG
genomic: CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAAgtaatattat ... atggttgtagTTATAATCCTCTGGAGAGGAGAGAGGTTAGCAAAGGTGGAAGAGAAACGAG
EST: gi|193495206|gb|FK463190.1|FK463190
EST:     CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAA                         TTATAATCCTCTGGAGAGGAGAGAGGTTAGCAAAGGTGGAAGAGAAACGAG
genomic: CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAAgtaatattat ... atggttgtagTTATAATCCTCTGGAGAGGAGAGAGGTTAGCAAAGGTGGAAGAGAAACGAG
EST: gi|208269719|gb|GE072155.1|GE072155
EST:     CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAA                         TTATAATCCTCTGGAGAGGAGAGAGGTTAGCAAAGGTGGAAGAGAAACGAG
genomic: CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAAgtaatattat ... atggttgtagTTATAATCCTCTGGAGAGGAGAGAGGTTAGCAAAGGTGGAAGAGAAACGAG
EST: gi|193706160|gb|FK647576.1|FK647576
EST:     CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAA                         TTATAATACCTACTGGAGAGGAGAGAGGTTAGCAAAGGTGGAAGAGAAACG
genomic: CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAAgtaatattat ... atggttgtagTTATAAT-CCT-CTGGAGAGGAGAGAGGTTAGCAAAGGTGGAAGAGAAACG
EST: gi|7685270|gb|AW755918.1|AW755918
EST:     CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAA                         TTATAATCCTCTGGAGAGGAGAGAGGTTAGCAAAGGTGGAAGAGAAACGAG
genomic: CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAAgtaatattat ... atggttgtagTTATAATCCTCTGGAGAGGAGAGAGGTTAGCAAAGGTGGAAGAGAAACGAG
EST: gi|192301066|gb|FG987991.1|FG987991
EST:     CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAA                         TTATAATTCTCTGGAGAGGAAAGAGGTTAGCAAAGGTGGAAGAGAAACGAG
genomic: CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAAgtaatattat ... atggttgtagTTATAATCCTCTGGAGAGGAGAGAGGTTAGCAAAGGTGGAAGAGAAACGAG
EST: gi|208289796|gb|GE088888.1|GE088888
EST:     CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAA                         TTATAATCCTCTGGAGAGGAGAGAGGTTAGCAAAGGTGGAAGAG
genomic: CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAAgtaatattat ... atggttgtagTTATAATCCTCTGGAGAGGAGAGAGGTTAGCAAAGGTGGAAGAG
EST: gi|192296790|gb|FG993088.1|FG993088
EST:     CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAA                         TTATAATCCTCTGGAGAGGAGAGAGGTTAGCAAAGGTGGAAGAGAAACGAG
genomic: CAATGGATGAAACGATACTGCGATTCTGTCAATTCCGGCCTTCAGCACAAgtaatattat ... atggttgtagTTATAATCCTCTGGAGAGGAGAGAGGTTAGCAAAGGTGGAAGAGAAACGAG