1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTGCTGACTTTAGATAAAGTTTACAATTTGGACTGGTTCAATAGTGCTTCCAAGAATGAGTGCTCTGCTGCAACTGGTTTGAAGTGGATGCTTAATCAGgtacacatgctttttgttagttttctgagtagtgtactgttgtcaacaaaccaacacattcattaatattaatgcttgtccaatggcttaggaaagttgt...
species | Glycine max |
transcript | GLYMA01G39190.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCAAGAATGAGTGCTCTGCTGCAACTGGTTTGAAGTGGATGCTTAATCAG GGATTGGTGGAGCACCATAAGGAAAEST: gi|207834365|gb|GD806266.1|GD806266
genomic: CCAAGAATGAGTGCTCTGCTGCAACTGGTTTGAAGTGGATGCTTAATCAGgtacacatgc ... gattatgcagGGATTGGTGGAGCACCATAAGGAAA
EST: CCAAGAATGAGTGCTCTGCTGCAACTGGTTTGAAGTGGATGCTTAATCAG GGATTGGTGGAGCACCATAEST: gi|31462888|gb|CD404916.1|CD404916
genomic: CCAAGAATGAGTGCTCTGCTGCAACTGGTTTGAAGTGGATGCTTAATCAGgtacacatgc ... gattatgcagGGATTGGTGGAGCACCATA
EST: CCAAGAATGAGTGCTCTGCTGCAACTGGTTTGAAGTGGATGCTTAATCAG GGATTGGTGGAGCACCATAAGGAAATAGCAGAATATTTCAATCATAGACGTEST: gi|208264168|gb|GE062538.1|GE062538
genomic: CCAAGAATGAGTGCTCTGCTGCAACTGGTTTGAAGTGGATGCTTAATCAGgtacacatgc ... gattatgcagGGATTGGTGGAGCACCATAAGGAAATAGCAGAATATTTCAATCATAGACGT
EST: CCAAGAATGAGTGCTCTGCTGCAACTGGTTTGAAGTGGATGCTTAATCAG GGATTGGTGGAGCACCATAAGGAAATAGCAGAATATTT
genomic: CCAAGAATGAGTGCTCTGCTGCAACTGGTTTGAAGTGGATGCTTAATCAGgtacacatgc ... gattatgcagGGATTGGTGGAGCACCATAAGGAAATAGCAGAATATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGCTGACTTTAGATAAAGTTTACAATTTGGACTGGTTCAATAGTGCTTCCAAGAATGAGTGCTCTGCTGCAACTGGTTTGAAGTGGATGCTTAATCAGgtacacatgctttttgttagttttctgagtagtgtactgttgtcaacaaaccaacacattcattaatattaatgcttgtccaatggcttaggaaagttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA