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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAAGTGAAAACATTTCAAATAATTGTCTTACAAGGCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTAATTGgtgagcctgaagccaacttctttacataaaacatgctaatgcaacatagcagtttgcaaaattgtatttttgcaacagttgtactacaaatcaagatcac...

Basic information

species Glycine max
transcript GLYMA01G38460.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38460.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g59450.1 (Oryza sativa), 5'ss of exon 3
ATCAAAGTGAAAACATTTCAAATAATTGTCTTACAAGGCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTAATTGgtgagcctgaagccaacttctttacataaaacatgctaatgcaacatagcagtt-tgcaaaattg-tatttttgcaacagttgtactacaaatcaagatcac
|| ||||||  |||||||||||| |||||||| || |||||  |||| ||| |||| ||||||||  | || ||||||||||||||||| || || ||||||  ||    |   |     |||| | || |  ||  | |    | |  | ||  |   | ||||  | | |||    |  | ||  |              
ATGAAAGTGCGAACATTTCAAATCATTGTCTTGCAGGGCATAGTTGGCTCATTGCCATGGACTGCTGTAGTTTTCTTCACAATGTGGTTTGAGCTCATTGgtatgcaaatatatagaca-tttatacaatatttgaaattatttccttcccgtcataagacattgacactcttg----aactttatcag-------------

upper sequence: GLYMA01G38460.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os07g10820.1 (Oryza sativa), 5'ss of exon 3
ATCAAAGTGAAAACATTTCAAATAATTGTCTTACAAGGCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTAATTGgtgagcctgaagccaacttctttacataaaacatgctaatgcaacatagcagtttgcaaaattgtatttttgcaacagttgtactacaaatcaagatcac
|| || |||   || ||||| || || ||| | ||||| || ||||| ||| |||| ||||||||||| || ||||||||||||||||| ||||| || |||  |     |      || || |  |  ||||  | ||||    ||  ||||   |  ||||  |  |   ||| |  | ||   |   | |       
ATGAAGGTGCGGACGTTTCAGATCATCGTCCTGCAAGGAATAATTGGATCATTGCCATGGACTGCCATAGTTTTCTTCACAATGTGGTTTGAACTCATCGgtatgatgacaaattgattatt-attttgaacactcaaatg----attacagtgccctcaatttgacgt---caagatgtttaaatcctcttag------

upper sequence: GLYMA01G38460.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G462325_T03 (Zea mays), 5'ss of exon 3
ATCAAAGTGAAAACATTTCAAATAATTGTCTTACAAGGCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTAATTGgtgagcctgaagccaacttctttacataaaacatgctaatgcaacatagcagtttgcaaaattgtatttttgcaacagttgtactacaaatcaagatcac
|| |||||||| || ||||| || |||||| | ||||| || ||||| ||  ||||||||||||| || || ||||||||||||||||||||||| ||||||      | | |||   | | ||| |  || |         |  | |    | |  ||| ||| ||| |  || | |||| || ||   |         
ATGAAAGTGAAGACGTTTCAGATCATTGTCCTGCAAGGGATCATTGGCTCGTTGCCGTGGACTGCTATAGTTTTCTTCACAATGTGGTTCGAACTCATTGgtacaatagcaacca-tatatatacttttaataaaaagtctgataacaatgctcttaaaatttgaattctaacatc-gttgaac-actcttag-------

upper sequence: GLYMA01G38460.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g01270.t01 (Vitis vinifera), 5'ss of exon 3
ATCAAAGTGAAAACATTTCAAATAATTGTCTTACAAGGCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTAATTGgtgagcctgaagccaacttctttacataaaacatgctaatgcaacatag---cagtttgcaaaattgtatttttgcaacagt-tgtactacaaatcaagatcac
|| |||||| |||||||||| || |||||||| || ||  || |||| ||||| || |||||||||||||| |||||||| |||||||| ||||||||||||||||   ||  |||     || | |||      | | ||||  |||     |  ||  |   |||    | |      ||   |  |  ||| |    |   
ATAAAAGTGCAAACATTTCAGATCATTGTCTTGCAGGGTGTTGTTGGTTCACTACCATGGACTGCCATGGTTTTCTTCACCATGTGGTTTGAACTAATTGgtgagcgcaaattcaagaatattcc-taagtttatcaagtgcatgataaatttaactttgagggttggccgtgtcttttggtgcctgttgtaaacctctgt---

upper sequence: GLYMA01G38460.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ14907 (Selaginella moellendorffii), 5'ss of exon 2
ATCAAAGTGAAAACATTTCAAATAATTGTCTTACAAGGCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTAATTGgtgagcctgaa-gccaacttctttacataaaacatgctaatgcaacatagcagtttgcaaaattgtatttttgcaacagttgtactacaaatcaagatcac
 | |  ||    || |||||  | || ||||| |||||  || |||| ||| | || ||||| || |||||||||||||||||||||||| |||| |||||  ||| |      | | || ||  |        | || |  |       |   || |  |                                        
GTGAGGGTACGGACTTTTCAGCTGATAGTCTTGCAAGGACTTGTTGGATCATTTCCTTGGACAGCGATGGTGTTCTTCACAATGTGGTTCCAACTTATTGgcaagctttcctatcgattttttctctcgt--tttcctgactcgtggctacctctttcccag---------------------------------------

upper sequence: GLYMA01G38460.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ38311 (Selaginella moellendorffii), 5'ss of exon 2
ATCAAAGTGAAAACATTTCAAATAATTGTCTTACAAGGCATTATTGGGTCACTGCCGTGGACTGCCATGGTGTTCTTCACAATGTGGTTCGAACTAATTGgtgagcctgaagccaacttctttacataaaacatgctaatgcaacatagcagtttgcaaaattgtatttttgcaacagttgtactacaaatcaagatcac
                                           |||| ||| | || ||||| || |||||||||||||||||||||||| |||| |||||  ||| |         || ||| |        | || |  |       |   || |  |                                        
------------------------------------------GTTGGATCATTTCCTTGGACAGCGATGGTGTTCTTCACAATGTGGTTCCAACTTATTGGCAAGCTTTCCTATCGATTTTTTTCTCTCGTTTTCCTGACTCgtggctacctctttcccag---------------------------------------