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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGGACGGTATTTTTTGCAGGCTGAGAAAGAACTTAGTGCTGGGTGGAAGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacctgcttgtgaatagcatttttgatattatcattgatgaatattaaaacaactgccaaaattttagaaagcgtaatatttcacaggaagaag...

Basic information

species Glycine max
transcript GLYMA01G38410.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38410.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g01300.t01 (Vitis vinifera), 5'ss of exon 3
GGATGGACGGTATTTTTTGCAGGCTGAGAAAGAACTTAGTGCTGGGTGGAAGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacctgcttgtgaatagcatttttgatattatcattgatgaatattaaaacaactgccaaaattttagaaagcgtaatatttcacaggaagaag--
 |||||||| || || ||||||||     | || || || |    |||||| || |||||  |||| ||||| |||| |||||||||||||||||| ||||||||| ||||  |||| || ||    ||| | |||||  |  |    ||           ||  ||  |   ||||| |   |  |      ||||||   
CGATGGACGATACTTCTTGCAGGCATCACAGGAGCTAAGCGACCAGTGGAAACTCATGCGCCTTGGAGAAGACCCTGGTGTAGATATCTGGATGGCAGATgtgagtcacct-tttgttaa-agttcctttaagattattttctaaagctaagggctgtgtagcgtaatatactgaaagaggtctcctcagtttgaagaatca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208029396|gb|GD827854.1|GD827854
EST:     AGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|208254286|gb|GE054724.1|GE054724
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|209700187|gb|BW656291.1|BW656291
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193713096|gb|FK652401.1|FK652401
EST:     TGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: TGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|208070197|gb|GD869628.1|GD869628
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|213606555|gb|DB972504.1|DB972504
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCATTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193323019|gb|FK287939.1|FK287939
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|207803512|gb|GD774473.1|GD774473
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|9986752|gb|BE660860.1|BE660860
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193512574|gb|FK466356.1|FK466356
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|208206594|gb|GE005787.1|GE005787
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193428981|gb|FK397611.1|FK397611
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTG
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTG
EST: gi|193439581|gb|FK409928.1|FK409928
EST:     CCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: CCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|213604280|gb|DB970568.1|DB970568
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|207786310|gb|GD757037.1|GD757037
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193657914|gb|FK601941.1|FK601941
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|213593640|gb|DB971662.1|DB971662
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|9986749|gb|BE660857.1|BE660857
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|207740473|gb|GD715293.1|GD715293
EST:     TGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: TGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|208079211|gb|GD873145.1|GD873145
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCGAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193533366|gb|FK490652.1|FK490652
EST:     TGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: TGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|208062431|gb|GD858087.1|GD858087
EST:     TGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: TGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|208323983|gb|GE121336.1|GE121336
EST:     TATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGGTTGATCCCTGGTGCATTTCAAT
genomic: TATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTT-GGGGTTGATCCCTGGTGCATTTCAAT
EST: gi|207794886|gb|GD763979.1|GD763979
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|207778331|gb|GD748866.1|GD748866
EST:     TCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: TCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|213614388|gb|DB969096.1|DB969096
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|9986750|gb|BE660858.1|BE660858
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATTCCNTGGGGCATTT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCC-TGGTGCATTT
EST: gi|208340975|gb|GE137453.1|GE137453
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|207770056|gb|GD742258.1|GD742258
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193686082|gb|FK626763.1|FK626763
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAAAA
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAA--
EST: gi|207699410|gb|GD679842.1|GD679842
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|9986753|gb|BE660861.1|BE660861
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|207691127|gb|GD673009.1|GD673009
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|209718533|gb|BW662665.1|BW662665
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193522279|gb|FK482110.1|FK482110
EST:     ATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: ATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|208181954|gb|GD979393.1|GD979393
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193535243|gb|FK491731.1|FK491731
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193319719|gb|FK284736.1|FK284736
EST:     TAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: TAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193687129|gb|FK630832.1|FK630832
EST:     ATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAAT
genomic: ATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAG-AAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAAT
EST: gi|208325713|gb|GE123259.1|GE123259
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|207840562|gb|GD812673.1|GD812673
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193591277|gb|FK547722.1|FK547722
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATACCCTGGTGCATTTC
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGAT-CCCTGGTGCATTTC
EST: gi|9986757|gb|BE660865.1|BE660865
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|254326926|gb|GR836535.1|GR836535
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|208197808|gb|GE001172.1|GE001172
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|298198429|gb|HO039968.1|HO039968
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193657855|gb|FK601490.1|FK601490
EST:     CCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: CCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193516700|gb|FK473976.1|FK473976
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|208071336|gb|GD872195.1|GD872195
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193312085|gb|FK277689.1|FK277689
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|209725459|gb|BW651578.1|BW651578
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193518373|gb|FK476658.1|FK476658
EST:     ATATCTGGATGGCCGAT                         AATTTGCCAAAAAGAAAGCATCCGTTGGGGGTTGATCCCTGGTGCATTTCA
genomic: ATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCC-AAAAG-AAGCATCCGTT-GGGGTTGATCCCTGGTGCATTTCA
EST: gi|193352000|gb|FK317583.1|FK317583
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|208193180|gb|GD988453.1|GD988453
EST:     ATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: ATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|207834980|gb|GD809093.1|GD809093
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCGTCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|208246065|gb|GE045679.1|GE045679
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193600063|gb|FK553356.1|FK553356
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|120530836|gb|EH258969.1|EH258969
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|208329812|gb|GE128845.1|GE128845
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|209705939|gb|BW661756.1|BW661756
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193514144|gb|FK467422.1|FK467422
EST:     ATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAAT
genomic: ATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAG-AAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAAT
EST: gi|208281471|gb|GE075537.1|GE075537
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193363347|gb|FK326241.1|FK326241
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTG
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTG
EST: gi|207827606|gb|GD800787.1|GD800787
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193362987|gb|FK328751.1|FK328751
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|207808055|gb|GD779650.1|GD779650
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|209698439|gb|BW667236.1|BW667236
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193598075|gb|FK550993.1|FK550993
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|207773054|gb|GD744962.1|GD744962
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|9986751|gb|BE660859.1|BE660859
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|9986747|gb|BE660855.1|BE660855
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|209699190|gb|BW652908.1|BW652908
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193401838|gb|FK369297.1|FK369297
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGA
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGA
EST: gi|193629898|gb|FK575024.1|FK575024
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|9986748|gb|BE660856.1|BE660856
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193413939|gb|FK376533.1|FK376533
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|208209567|gb|GE001836.1|GE001836
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|208285801|gb|GE082527.1|GE082527
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCA
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCA
EST: gi|193517698|gb|FK474877.1|FK474877
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
EST: gi|193640609|gb|FK587618.1|FK587618
EST:     AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGAT                         AATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT
genomic: AGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacc ... ctttcaccagAATTTGCCAAAAGAAGCATCCGTTGGGGTTGATCCCTGGTGCATTTCAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATGGACGGTATTTTTTGCAGGCTGAGAAAGAACTTAGTGCTGGGTGGAAGCTAATGCGAATTGGTGAAGATCCTGCTGTAGATATCTGGATGGCCGATgtgagtaacctgcttgtgaatagcatttttgatattatcattgatgaatattaaaacaactgccaaaattttagaaagcgtaatatttcacaggaagaag

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