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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattcagttcatttttgtcactgataactgtatttttgtgtatatgttttatctacttaatgcgaacgctttctgattattgttgaaactacttat...

Basic information

species Glycine max
transcript GLYMA01G38120.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38120.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G50670.1 (Arabidopsis thaliana), 5'ss of exon 3
GGATGGCTCAATTTGTGAGCAAGTTTGCCCAGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattcagttcatttttgtcactgataactgtatttttgtgtatatgttttatctacttaatgcgaacgctttctgatt-attgttgaaactacttat
| |||||||| ||||| || || |||||  ||||||| ||||||||||| |||||||||   ||||||   ||    ||||||  ||    | ||  |||  | ||    | | |     | | |  |   |  |||       |         || || || |||||  |          
GTATGGCTCAGTTTGTAAGTAACTTTGCTGAGCCTGGGGATCCAGAATACGCTCCACCTAAGCCAGAAGTTGAATTACCTgtatgat--gatgcacctttaactctttcgattattgccatattttaaccctaaatcagtggcttatagctttgttttgtttcattgtccag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590261|gb|DB963838.1|DB963838
EST:     AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT                         GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: gi|209698701|gb|BW660702.1|BW660702
EST:     AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT                         GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: gi|213613578|gb|DB963280.1|DB963280
EST:     AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT                         GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: gi|209720113|gb|BW651142.1|BW651142
EST:     AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT                         GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: gi|209708951|gb|BW653492.1|BW653492
EST:     AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT                         GCACAAAAA-GAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: gi|213589944|gb|DB969681.1|DB969681
EST:     AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT                         GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: gi|209710662|gb|BW665074.1|BW665074
EST:     AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT                         GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: gi|213601327|gb|DB956661.1|DB956661
EST:     AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT                         GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: gi|208216880|gb|GE015206.1|GE015206
EST:     AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT                         GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
EST: gi|298164362|gb|HO014007.1|HO014007
EST:     AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCT                         GCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA
genomic: AGCCTGGCGATCCAGAATATGCTCCACCTGTCCCAGAAACCGAGACTCCTgtagtattca ... atgaatgtagGCACAAAAAAGAGCCAGAATACACAAGCTAAGGCTAGAGAAAGGAGCTGCA