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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCATTTTTGCATATGGACAAACAAGCAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGTCAGACATTTTTAACTACATAGAAAAGgtaggtgaaatacgaacatgtcaatacattaccttgtctttctcaaaaacctttttttgatttggttttaccttttcatag

Basic information

species Glycine max
transcript GLYMA01G37340.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37340.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G51150.2 (Arabidopsis thaliana), 5'ss of exon 5
AAGCATTTTTGCATATGGACAAACAAGCAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGTCAGACATTTTTAACTACATAGAAAAGgtaggtgaaatacgaacat-gtcaatacattaccttgtctttctcaaaaacctttttttgatttggttttaccttttcatag-------------------
 ||  | ||||||||||| |||||||||||||| ||||||||||| |||| ||| || || || ||  |  || | || || | | | ||||| || ||||||     || |  | ||  |||   | | ||   |  |    | |    |  ||  || | |   | |  |||||| | |                    
TAGTGTCTTTGCATATGGGCAAACAAGCAGTGGAAAGACATACACTATGATTGGTATTACGGATTATGCCTTGGCTGATATATATGATTACATTGAGAAGgtaaagttaacaatatcagagtcttcatagtaatcttaccgcattatttccaattcattcagtaactgtcgccttttaaaaaaattatttgttttttgcag

upper sequence: GLYMA01G37340.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G66310.1 (Arabidopsis thaliana), 5'ss of exon 5
AAGCATTTTTGCATATGGACAAACAAGCAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGTCAGACATTTTTAACTACATAGAAAAGgtaggtgaaatacgaac-atgtcaatacattaccttgtctttctcaaaaacctttttttgatttggttttaccttttcatag
 ||  | || |||||||| |||||||||||||| ||||| ||||| ||||| || || ||||| | | |  ||   || || | |  |||||| || ||||||    ||  |   |  ||    |||  ||||    | |   ||  |  || || | |  ||  || ||  ||||    ||
TAGTGTATTCGCATATGGGCAAACAAGCAGTGGAAAGACGTACACTATGAGCGGAATTACTGACTGCGCCTTGGTTGATATATATGGCTACATTGACAAGgtaaagaaagcaaacattatccttatatcttactac-tttacttccgagcccattatgtagttgtgtatttgctttctgcag

upper sequence: GLYMA01G37340.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 5'ss of exon 3
AAGCATTTTTGCATATGGACAAACAAGCAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGTCAGACATTTTTAACTACATAGAAAAGgtaggtgaaatacgaacatgtcaatacattaccttgtctt---tctcaaaaacctttttttgatttggttttacc--ttttcatag--------
||| |||||||| |||||||||||||||||||| ||||||| ||| ||||| || || ||||| || ||  || |||| || | | || | ||||| | ||||    ||| || |  || |||   | || |||    ||   |  || ||       |||  |||| |   |    || | |||         
AAGTATTTTTGCTTATGGACAAACAAGCAGTGGAAAGACATTCACTATGAGCGGAATTACTGAGTATACCATGGCAGATATATATGACCATATAGAGAGGgtaatcaaaacaccactatatcatcccctttcctctctttcagttccataatttcccatttcctttgatgaaaaaaattgttatacatttgtag