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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACAAAGGAAGAGCCCCAAATGGACAGAAAAGTGATTGGATCATGCACGAGTATAGGCTTGAATCTGATGAGAATGGACCCCCACAGGCAAGCATATATgttactgtttagtaatctgtagtgcataagtactctaccatttattcttttacacgctttgacttttgttaccaacttagtaatatgagtggttgagttt...

Basic information

species Glycine max
transcript GLYMA01G37310.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37310.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G36160.1 (Arabidopsis thaliana), 5'ss of exon 3
------------CTACAAAGGAAGAGCCCCAAATGGACAGAAAAGTGATTGGATCATGCACGAGTATAGGCTTGAATCTGATGAGAATGGACCCCCACAGGCAAGCATATATgttactgtttagtaatctgtagtgcataagtactctaccatttattcttttacacgctt----tgacttttgttaccaacttagtaatatgagtggttgagttt
            |||||||||||||||||| ||||| || ||||  |||||||||||||| || ||  |||| || || |||||||||| ||| || |||| |  |   | |  |||    ||  | | || | | ||||  |        | || || |  || | | |     | | |||| |   | ||   | | ||               
AACACTTGTGTTCTACAAAGGAAGAGCCCCTAATGGCCAAAAAACCGATTGGATCATGCATGAATACCGGCTAGAGTCAGATGAGAATGCACCTCCTCAGgtattctcgttt--tacctgatatcattttgaaatacatagatttgaggataattgttatactagatgttcaatctaaattttatcctctaccgggaattac--------------

upper sequence: GLYMA01G37310.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g03110.t01 (Vitis vinifera), 5'ss of exon 2
--------CTACAAAGGAAGAGCCCCAAATGGACAGAAAAGTGATTGGATCATGCACGAGTATAGGCTTGAATCTGATGAGAATGGACCCCCACAGGCAAGCATATATgttactgtttagtaatctgtagtgcataagtactctaccatttattcttttacacg-ctttgacttttgttaccaacttagtaatatgagtggttgagttt
         ||||||||  |||| || ||||| ||||||| ||| ||||| ||||||||||| ||||| ||||| || ||||||||||| ||||||||||| ||| |  || || |||   | |   || |  |    | |   | |||  |  || || |  | |||| | |  |   |   |   | |||   |  || ||      
CTCGTCTTTTACAAAGGGCGAGCGCCCAATGGGCAGAAAACTGACTGGATTATGCACGAGTACAGGCTCGAATCGGAAGAGAATGGACCTCCACAGGCAAgtata-accttcctttttttgactaattaatcaacccttgcc--atcatgcaacctctttcctgtctttcaatcattccatttagccattaagtgggatgttt------