Sequence
atgc intronic sequence ATGC exonic sequenceAGCGAGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCTTTAATGCTTTTGAGGATGATTCATATGTGTACATAGTTATGGAgtaagttattttcattttttagtctcttttctatactgcttcaatgtgttcatatggttttgagcatcacttaactgcaatttactctggatatatcttt...
Basic information
species | Glycine max |
transcript | GLYMA01G37100.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G37100.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g03410.2 (Oryza sativa), 5'ss of exon 2
AGCGAGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCTTTAATGCTTTTGAGGATGATTCATATGTGTACATAGTTATGGAgtaagttattttcattttttagtctcttttctatactgcttcaatgtgttcatatggt-tttgagcatcacttaactgcaatttact-ctggatatatcttt---
|| ||||||| ||||| | |||||||||| ||||||||| ||| | ||||| |||| ||||| ||||| ||||| |||||||| || || || ||||||||||| || || | ||| ||| || || | | || |||| || || | | | | | | | || |||| | || || ||| |
AGAGAGAAGTGAAGATTCTTAAAGAACTTAAAGGCCATGAGAATATTGTTCACTTCTACAATGCGTTTGAAGATGACTCATATGTATATATTGTGATGGAgtaagtagtt---atatactagcttctcttacatttcg-tgcacaatgtt-atttgctatatacactccttgcacttacattttatttctacctaaatcctaata
upper sequence: GLYMA01G37100.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G053868_T02 (Zea mays), 5'ss of exon 2
AGCGAGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCTTTAATGCTTTTGAGGATGATTCATATGTGTACATAGTTATGGAgtaagttattttcattttttagtctcttttctatactgcttcaatgtgttcatatggttttgagcatcacttaactgcaatttactctggatatatcttt----
| ||||||| ||||| | |||| ||||| ||| ||| | ||| | ||||| |||| ||||| ||||||||||||||||| |||||||| || ||||||||||| | ||| || || | ||| || | | || |||| ||| | | | | || | | || |||| |
AAAGAGAAGTGAAGATTCTTAAAGCACTTAAAGGACATCAGAATATTGTTCACTTCTACAATGCATTTGAGGATGATTCATACGTGTACATTGTGATGGAgtaagt-aggcccatacacctgttcctgcta-atagagcatatcgattttgctatgacttttttccctaa--agttttaacatgaacaatatctatcctgttta
upper sequence: GLYMA01G37100.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g03420.t01 (Vitis vinifera), 5'ss of exon 2
AGCGAGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCTTTAATGCTTTTGAGGATGATTCATATGTGTACATAGTTATGGAgtaagttattttcattttttagtctcttttctatactgcttcaatgtgttcatatggttttgagcatcacttaactgca--atttactctggatatatcttt---
||||||| ||||| ||||| ||| ||||| |||||||| ||||||||||||||| |||||| |||||||||||||| ||||| || |||||||||||||| | |||| ||| | || || ||| | | ||| | || | || | || ||| || | ||| | | || | || ||||| |
AGCGAGAGGTCAAAATATTAGAAGCGCTTACCGGCCATGAGAATGTGGTTCAGTTCCATAATGCATTTGAGGATGATTCTTATGTCTATATAGTTATGGAgta---tgttttgtgatttgaagcttcttactaaaatcgttc--tttggctaattgtctgtgccattcatttgattgctttgtgtgctattaatttatctattctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207737594|gb|GD716030.1|GD716030EST: CAGTTCTTTAATGCTTTTGAGGATGATTCATATGTGTACATAGTTATGGA GTTATGTGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAA
genomic: CAGTTCTTTAATGCTTTTGAGGATGATTCATATGTGTACATAGTTATGGAgtaagttatt ... accttcttagGTTATGTGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCGAGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCTTTAATGCTTTTGAGGATGATTCATATGTGTACATAGTTATGGAgtaagttattttcattttttagtctcttttctatactgcttcaatgtgttcatatggttttgagcatcacttaactgcaatttactctggatatatcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG