Sequence
atgc intronic sequence ATGC exonic sequenceGTAAAGTGTGTGATGCTGTTGAAGTAGCTGGAAAAAATGTCATGTCAACATCATCAACTGTGACAACTGAGCTTGTCGATCACAGgtaaagcttgatatatgcattatctagagtgtaaaatacctagagattagggattgaatctgatgatagtataatatttgcttttcctaaactaatgatg...
Basic information
species | Glycine max |
transcript | GLYMA01G36960.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G36960.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G17840.1 (Arabidopsis thaliana), 5'ss of exon 3
GTAAAGTGTGTGATGCTGTTGAAGTAGCTGGAAAAAATGTCATGTCAACATCATCAACTGTGACAACTGAGCTTGTCGATCACAGgtaaagcttgatatatgcattatctagagtgtaaaatacctagagattagggattgaa---tctgatgatagtataatatttgcttttcctaaactaatgatg
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ATAAGGTCTGTGACGCTGTTGAAGTAGCTGGGAGGAATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGATCACAAgtaa-----gtaaaatcgagtatttggaat-tgaaactcctggttatttggatatggaaagtgttttaagagaaggatgtaaattttggtttgatgaatatag
upper sequence: GLYMA01G36960.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G51250.1 (Arabidopsis thaliana), 5'ss of exon 3
GTAAAGTGTGTGATGCTGTTGAAGTAGCTGGAAAAAATGTCATGTCAACATCATCAACTGTGACAACTGAGCTTGTCGATCACAGgtaaagcttgatatatgcattatctagagtgtaaaatacctagagattagggattgaatctgatgatagtataatatttgcttt--tcctaaactaa--tgatg---------------------
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GCAAGATCTGTGATGCTGTTGAAGTTGCTGGGAAAAACGTAATGTCGACTTCATCAACTGTCACAACAGAATTAGTCAATCACAGgtattgattagcaaaggcat-atataaacaatcacatatctccgcatgagtgatcttcagcaagagtgat-caaagtttccttagatcttaaagaaacctcatggattctgtttcgaaattacag
upper sequence: GLYMA01G36960.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g03670.t01 (Vitis vinifera), 5'ss of exon 3
GTAAAGTGTGTGATGCTGTTGAAGTAGCTGGAAAAAATGTCATGTCAACATCATCAACTGTGACAACTGAGCTTGTCGATCACAGgtaaagcttgatatatgcattatctagagtgtaaaatacctagagattagggattgaatctgatga----tagtataatattt--gcttttcctaaactaatgatg
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GTAAGGTCTGTGATGCGGTTGAAGTAGCCGGAAGGAATGTTATGTCAACATCATCCACTGTGACCACTGGACTTGTGTCACATAGgtaga-cttcacatg-atattttttat--tttaaagcattcaggaaaaagaagtaaaatacaatagaaatcagccaagtctttaggaccctctctattcaatgg--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|308098778|gb|HO760519.1|HO760519EST: AATGTCATGTCAACATCATCAACTGTGACAACTGAGCTTGTCGATCACAG ATATGGAGAACAAGCAGCTGAAGCAACAAGTGAAGGGTTTAGTGCTGCTGG
genomic: AATGTCATGTCAACATCATCAACTGTGACAACTGAGCTTGTCGATCACAGgtaaagcttg ... aatactgcagATATGGAGAACAAGCAGCTGAAGCAACAAGTGAAGGGTTTAGTGCTGCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAAAGTGTGTGATGCTGTTGAAGTAGCTGGAAAAAATGTCATGTCAACATCATCAACTGTGACAACTGAGCTTGTCGATCACAGgtaaagcttgatatatgcattatctagagtgtaaaatacctagagattagggattgaatctgatgatagtataatatttgcttttcctaaactaatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT