Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGGTGGTGGTGTGATTGGCGACATGTGTGGCTGTGCTGCTGCTTTGTTCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgctgctcttttaaaaaaatattttcatgatatgtgtttattagaccttttgtggctctggctaatgttaatggttctagtctctggctctctgctatctatgttatcccattccctgttcattgggttgtgtattatgttcccag

Basic information

species Glycine max
transcript GLYMA01G36890.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36890.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g36800.1 (Oryza sativa), 5'ss of exon 3
TCTTGGTGGTGGTGTGATTGGCGACATGTGTGGCTGTGCTGCTGCTTTGTTCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgctgctcttttaaaaaaatattttcatgatatgtgtttattagaccttttgtggctctggctaatgttaatggttctagtctctggctctctgctatctatgttatcccattccctgttcattgggttgtgtattatgttcccag
  | || ||||| || ||||| |||||||| || | ||| ||||||  |||||| |||||||| ||||| || ||||||||||| ||| |||||||||||||| |  |||    ||    | |  | ||   |  ||  ||      |||     |  |  |  ||       | |||   | |||                                                                  
GTTGGGAGGTGGCGTTATTGGGGACATGTGCGGTTTTGCAGCTGCTGCGTTCCTGCGTGGTGTCAATTTCATACAGATTCCTACTACTCTGATGGCCCAGgtcctaagcttgattt----agattttttactacaattggttacatgtagcttgatgctaacggtgagctgcatgaattactttag------------------------------------------------------------------

upper sequence: GLYMA01G36890.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G051129_T01 (Zea mays), 5'ss of exon 2
TCTTGGTGGTGGTGTGATTGGCGACATGTGTGGCTGTGCTGCTGCTTTGTTCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgct-gctcttttaaaaaaatattttcatgatatgtgtttattagaccttttgtggctctggctaatgttaatggttctagtctctggctctctgctatctatgttatcccattccctgttcattgggttgtgtattatgttcccag
 || ||||||||||| ||||| ||||||||||| | ||| ||||||   ||||| || || || ||||| || ||||| || || ||| |||||||||||||| |  ||| | | | |       | | ||   | | || |   | || |  ||  ||| |||| |   | || |   |                                                                         
ACTGGGTGGTGGTGTCATTGGGGACATGTGTGGTTTTGCAGCTGCTGCATTCCTCCGGGGCGTCAATTTCATACAGATACCAACTACTCTGATGGCCCAGgtcataagcttgatttatggtccctaaagttggtttacatataggt-ttggttctgatgttgctcggatgactgctttag-------------------------------------------------------------------------

upper sequence: GLYMA01G36890.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G66120.2 (Arabidopsis thaliana), 5'ss of exon 3
TCTTGGTGGTGGTGTGATTGGCGACATGTGTGGCTGTGCTGCTGCTTTGTTCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgt-cttttgctgctcttttaaaaaaatattttcatgatatgtgtttattagaccttttgtggctctggctaatgttaatggttctagtctctggctctctgctatctatgttatcccattccctgttcattgggttgtgtattatgttcccag
 ||||| || |||||||| ||||| |||||||| | ||||||||| | || |||||||||||| ||||| || || |||||||||||||| ||||| ||||| | |||    ||    |  |  ||| | ||          || ||  | | | ||      ||  |  ||    || | || |  | ||| |||       || ||  ||  ||                                     
CCTTGGAGGCGGTGTGATAGGCGATATGTGTGGATATGCTGCTGCATCGTACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAGgtacatttttcacttcactgtaggaatttctt----------gtcta--aaatcattaaca--tccagaaaa----aaggttttttatttctcgctgcaattcattta-attgccctgcag--------------------------------

upper sequence: GLYMA01G36890.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g03820.t01 (Vitis vinifera), 5'ss of exon 3
TCTTGGTGGTGGTGTGATTGGCGACATGTGTGGCTGTGCTGCTGCTTTGTTCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgctgctcttttaaaaaaatattttcatgatatgtgtttattagaccttttgtggctctggctaatgttaatggttctagtctctggctctctgctatctatgttatcccattccctgttcattgggttgtgtattatgttcccag
  ||||||||||||| ||||| ||||||||||| | ||||||||||   ||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||| | |          |||||         |||    |  | ||||   | | | |||   |  | ||     | |   || | ||     | | |  |  |   || ||  ||| | |                                 
CGTTGGTGGTGGTGTTATTGGTGACATGTGTGGATTTGCTGCTGCTGCCTTCCTTCGTGGTGTTAATTTCATTCAGATTCCTACAACTGTAATGGCACAGgtatgtc---------ttaaa---------tcacagcacctttttagctggc-tcttgctccctttgcatgcttcaggtgtacaagggctggacaccttctttcttaggtgctcctaat---------------------------------

upper sequence: GLYMA01G36890.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S37_309V6.1 (Physcomitrella patens), 5'ss of exon 2
TCTTGGTGGTGGTGTGATTGGCGACATGTGTGGCTGTGCTGCTGCTTTGTTCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgctgctcttttaaaaaaatattttcatgatatgtgtt-tattagaccttttgtggctctggctaatgttaatggttctagtctctggctctctgctatctatgttatcccattccctgttcattgggttgtgtattatgttcccag
  | || ||||| || || || ||||||||||| | |||||||||||  |  || |||||||| |||||||| ||||||||||| ||  | ||||| |||||    |  || | |  |  ||          ||| |   |    |||  ||    || | ||||| || ||  ||     ||  ||  ||  | |    |                                                    
ATTGGGAGGTGGAGTAATCGGGGACATGTGTGGTTATGCTGCTGCTTCTTATCTTCGTGGTGTCAATTTTATCCAGATTCCTACGACCCTCATGGCACAGgttgaatcatgatttcctttaaccccgaacgtatgtttcttccagtatatgataactttttgctcttgc-aaccttgtatttttcagcgtcgagattctag----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325488|gb|FK018414.1|FK018414
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAG                         GTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGA-G
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
EST: gi|151396219|gb|EV266096.1|EV266096
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAG                         GTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
EST: gi|27426317|gb|CA937837.1|CA937837
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAG                         GTCGATTCTTCAGTTGGTGGCAAA
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGCAAA
EST: gi|151407393|gb|EV277208.1|EV277208
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAG                         GTCGATTCTTCAGTTGGTGGCAAA-CTGG
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGG
EST: gi|193687682|gb|FK633037.1|FK633037
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAG                         GTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
EST: gi|151410909|gb|EV280724.1|EV280724
EST:     TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAG                         GTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
genomic: TCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
EST: gi|16281822|gb|BI944687.1|BI944687
EST:     CTACGTGGTGTTAATTTTATTCATTATTCCTACCACTGCT-ATGGCCCAG                         GCCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG
genomic: CTACGTGGTGTTAATTTTATTCA-GATTCCTACCACTG-TGATGGCCCAGgtcttttgct ... atgttcccagGTCGATTCTTCAGTTGGTGGCAAAACTGGGATCAATCACCGCCTTGGGAAG