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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGCCATATCAGGAGCCGTTTTCTCCATTGAAGTGTTTGAATCCTCTCTTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttactcacctttcagaatgcagttctctaggtgcttttgatgctgttgttcaattagaattggagttttaccgtagtattttgcataatccttgg...

Basic information

species Glycine max
transcript GLYMA01G36760.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36760.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0264g00020.t01 (Vitis vinifera), 5'ss of exon 2
TGGTGCCATATCAGGAGCCGTTTTCTCCATTGAAGTGTTTGAATCCTCTCTTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttactcacctttcagaatgcagttctctaggtgcttttgatgct-gttgttcaattag--aattggagttttaccgtagtattttgcataatccttgg
||| || ||||||||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||||| || |||||||| ||| |  | ||| |||||||  | |   |||   |    |  ||    |  ||||||  ||| | |  | | | || |  ||||   |  |    || | |    | | |    |   
TGGAGCAATATCAGGAGCTGTTTTCTCTATTGAGGTCTTTGAATCTTCTCTTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTGgtgagcaatttggcttcttg--ccccattgatcatatgcttt-aatgttaggggataagttggtgaattatggactctgggtgggaaaaggaagagaaatata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207808245|gb|GD777152.1|GD777152
EST:     TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTG                         ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
EST: gi|298168945|gb|HO020249.1|HO020249
EST:     TTGTTCTCTGGCAATCTGATGAATCTGGGACTGGTTGTGTCTTATACTTG                         ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
EST: gi|207796984|gb|GD770306.1|GD770306
EST:     TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTG                         ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
EST: gi|298198959|gb|HO042322.1|HO042322
EST:     TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTG                         ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
EST: gi|298197843|gb|HO039382.1|HO039382
EST:     TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTG                         ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
EST: gi|15663346|gb|BI700717.1|BI700717
EST:     TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTG                         ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
EST: gi|208228660|gb|GE023254.1|GE023254
EST:     TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTG                         ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
EST: gi|208037157|gb|GD836570.1|GD836570
EST:     TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTG                         ATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT
genomic: TTGTTCTCTGGCAATCTGATGAATCTGGGATTGGTTGTGTCTTATACTTGgtgagttact ... agttgtgcagATTGATGTTATTGTCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATT