1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGGATGCCAGATGCTGCTATGTTGACCCAGTTAATGCAAAACCCAGCCATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGgtattaacctactgtctgtgcctataatttcatgttttgaactgatctctctaacatttttatttacttttag
species | Glycine max |
transcript | GLYMA01G36410.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCACAGACTATGAATCAG ATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTAEST: gi|9820326|gb|BE555836.1|BE555836
genomic: CCACAGACTATGAATCAGgtattaacct ... ttacttttagATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTA
EST: TTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAG ATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTAEST: gi|6072998|gb|AW102385.1|AW102385
genomic: TTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGgtattaacct ... ttacttttagATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTA
EST: TTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAG ATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTA
genomic: TTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGgtattaacct ... ttacttttagATTCTTGGGGTCAATAACGAGCAGCGTGGCATGCCTGATTTGAATTCTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGATGCCAGATGCTGCTATGTTGACCCAGTTAATGCAAAACCCAGCCATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGgtattaacctactgtctgtgcctataatttcatgttttgaactgatctctctaacatttttatttacttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG