Sequence
atgc intronic sequence ATGC exonic sequenceAAGATGCCAATAACTTCAAGGGTCATTCAGGAGACTCTAAGAGTTGCTTCAATTTTGTCTTTTACTTTCAGAGAAGCAGTAGAGGATGTTGAATACCAAGgtcaattaccaaatctgatatgataccttatttttaatttttaacacaaggtctcctttccttttctcacttaagctcacagattctatgttggttattgttcttctttag
Basic information
species | Glycine max |
transcript | GLYMA01G35660.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G35660.2 (Glycine max), 5'ss of exon 3
lower sequence: AT4G19230.1 (Arabidopsis thaliana), 5'ss of exon 4
AAGATGCCAATAACTTCAAGGGTCATTCAGGAGACTCTAAGAGTTGCTTCAATTTTGTCTTTTACTTTCAGAGAAGCAGTAGAGGATGTTGAATACCAAGgtcaattaccaaatctgatatgataccttatttttaatttttaacacaaggtctcctttcctt-ttctcacttaagctcacagattctatgttggttattgttcttctttag
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AAGATGCCATTAACTTCAAGAGTTATTCAAGAAACATTAAGAGTCGCTTCAATCTTATCTTTCACATTCAGAGAAGCTGTCGAAGATGTCGAATACGAAGgt-----actaaac---atacacaattaaaccgataaatgatgac----gatctcgagtcgaaattcgaactaacattctatggttttacag--------------------
upper sequence: GLYMA01G35660.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0087g00710.t01 (Vitis vinifera), 5'ss of exon 4
AAGATGCCAATAACTTCAAGGGTCATTCAGGAGACTCTAAGAGTTGCTTCAATTTTGTCTTTTACTTTCAGAGAAGCAGTAGAGGATGTTGAATACCAAGgtcaattaccaaatctgatatgataccttatttttaatttttaacacaaggtctcctttccttttctcacttaagctcacagattctatgttggttattgttcttctttag
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AAGATGCCAATAACTTCAAGGGTGATTCAAGAAACACTTAGAATTGCTTCAATTTTATCTTTCACCTTTAGAGAGGCTGTTGAAGATGTTGAATTTGAAGgt-aggtagttaccttggaat--ttttctattttta-tctttttctcatactcttccaaatatgtc-caaaaaaataaataacccacactctaattcttgcag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6951922|gb|AW423990.1|AW423990EST: TTGAATACCAAG GGTATCTTATTCCAAAAGGGTGGAAAGTGCTACCTCTATTTAGGAACATAC
genomic: TTGAATACCAAGgtcaattacc ... tcttctttagGGTATCTTATTCCAAAAGGGTGGAAAGTGCTACCTCTATTTAGGAACATAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGATGCCAATAACTTCAAGGGTCATTCAGGAGACTCTAAGAGTTGCTTCAATTTTGTCTTTTACTTTCAGAGAAGCAGTAGAGGATGTTGAATACCAAGgtcaattaccaaatctgatatgataccttatttttaatttttaacacaaggtctcctttccttttctcacttaagctcacagattctatgttggttattgttcttctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG