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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtgtgtccctgtctacaaatttccatcaataattagtcttaaaaaatcaaatttggttcattgttctgcctcatcttttttgaaaaatcatataaggtttattttcaatggtttttaacttttcatttcttaatctatttcgtttctactag

Basic information

species Glycine max
transcript GLYMA01G35480.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35480.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0087g00400.t01 (Vitis vinifera), 5'ss of exon 3
TTTGTTTGGATGGGAGTCCACCAGCTTACCATTTTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtgtgtccctgtctacaaatttccatcaataattagtcttaaaaaatcaaatttggttcattgttctgcctcatcttttttgaaaaatcatataaggtttattttcaatggtttttaacttttcatttcttaatctatttcgtttctactag
|||| |||||||| || ||||| ||||||||  | ||||||||||||||  |||||||||||||||||||||||    |||||||     || |   |||| | |   |  |   || || | |  |  |  |   || ||  ||| |  |        ||   | |||   | | ||  ||        ||||  ||| | |  |                             
TTTGCTTGGATGGTAGCCCACCTGCTTACCACATGGATAAGGGATTTGGTGCAGGGATTAACAATTGGTTGGTTCATATTGAGgta----ccag---acaactgt---ttgaagttttgtttcatgatgtatatagtgattggttgctaagaaa-----ttggaggaaagggaaagaaaatt--------atgggattttattact-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13311525|gb|BG405176.1|BG405176
EST:     TTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAG                         GGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
genomic: TTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtgtgtccct ... tttctactagGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
EST: gi|151394706|gb|EV264577.1|EV264577
EST:     TTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAG                         GGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
genomic: TTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtgtgtccct ... tttctactagGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
EST: gi|13311486|gb|BG405137.1|BG405137
EST:     TTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAG                         GGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
genomic: TTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtgtgtccct ... tttctactagGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
EST: gi|213605459|gb|DB966952.1|DB966952
EST:     TTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAG                         GGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT
genomic: TTGATAAGGGATTTGGATCAGGGATTAACAATTGGTTGGTTGCATTTGAGgtgtgtccct ... tttctactagGGAGGAGGATGGTGCAACAATGTCACTACTTGCCTTGCTCGCAAGACCAAT