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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGTTCTTGGCATTGACATTGATCCAGAATCTCTTGAAATAGCTTCCAATAATGCTGAGGAACTTGAGgtatcgtctttctgcttattattatggtaaatgagtgtctagatcaatatgtttcgtattgcaattgtcgagtctcttgtttgatgaaaagaataataat...

Basic information

species Glycine max
transcript GLYMA01G34690.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192324313|gb|FK018289.1|FK018289
EST:     TTGATCCAGAATCTCTTGAAATAGCTTCCAATAATGCTGAGGAACTTGAG                         GTTGACATCGATTTTATTCAGTCTAATGTCATGGACTTGGGATGGAGAG
genomic: TTGATCCAGAATCTCTTGAAATAGCTTCCAATAATGCTGAGGAACTTGAGgtatcgtctt ... aaaactgcagGTTGACATCGATTTTATTCAGTCTAATGTCATGGACTTGGGATGGAGAG
EST: gi|208334925|gb|GE132870.1|GE132870
EST:     TTGATCCAGAATCTCTTGAAATAGCTTCCAATAATGCTGAGGAACTTGAG                         GTTGACATCGATTTTATTCAGTCTAATGTCATGGAACTTAGGGAATAGGAG
genomic: TTGATCCAGAATCTCTTGAAATAGCTTCCAATAATGCTGAGGAACTTGAGgtatcgtctt ... aaaactgcagGTTGACATCGATTTTATTCAGTCTAATGTCATGGA-CTT-GGGA-T-GGAG
EST: gi|208125644|gb|GD920674.1|GD920674
EST:     TTGATCCAGAATCTCTTGAAATAGCTTCCAATAATGCTGAGGAACTTGAG                         GTTGACATCGATTTTATTCAGTCTAATGTCATGGGCTTGGGATGGAGAG
genomic: TTGATCCAGAATCTCTTGAAATAGCTTCCAATAATGCTGAGGAACTTGAGgtatcgtctt ... aaaactgcagGTTGACATCGATTTTATTCAGTCTAATGTCATGGACTTGGGATGGAGAG
EST: gi|192328952|gb|FK019679.1|FK019679
EST:     TTGATCCAGAATCTCTTGAAATAGCTTCCAATAATGCTGAGGAACTTGAG                         GCTGACATCGATTTTATTCAGTCTAATGTCATGGACTTGGGATGGAGAG
genomic: TTGATCCAGAATCTCTTGAAATAGCTTCCAATAATGCTGAGGAACTTGAGgtatcgtctt ... aaaactgcagGTTGACATCGATTTTATTCAGTCTAATGTCATGGACTTGGGATGGAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACATGTTCTTGGCATTGACATTGATCCAGAATCTCTTGAAATAGCTTCCAATAATGCTGAGGAACTTGAGgtatcgtctttctgcttattattatggtaaatgagtgtctagatcaatatgtttcgtattgcaattgtcgagtctcttgtttgatgaaaagaataataat

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