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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCGCTGTGTTTTGAAGATGGACCACCATTGTGTGTGGGTAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTGgtatgtacaccttagctgaagttgttgttttattatctagttattaatcatgtgaattgtattatttctgacttacaatgattctatttgatgtctctga...

Basic information

species Glycine max
transcript GLYMA01G34270.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G34270.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ04865 (Selaginella moellendorffii), 5'ss of exon 3
GTGGGCGCTGTGTTTTGAAGATGGACCACCATTGTGTGTGGGTAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTGgtatgtacaccttagctgaagttgttgttttat-tatctagttattaatcatgtgaattgtattatttctgacttacaatgattctatttgatgtctctga
|||| || || ||  | |||||||||||||| ||||| ||||| ||||| |||||||| ||||  || |||||    || || |||||| ||||| |   ||    ||  |   |  |  | |   | |  |  | |  ||  |||| |                                            
GTGGACGATGCGTCCTCAAGATGGACCACCACTGTGTCTGGGTTGTCAATTGTGTTGGTGCTCGCAACTACAAGGCGTTTCTACTTTTCCTGgtacg---acgggtgccaatcatcctcctctgcatgttgacgtctggatattgtgcag-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393214|gb|EV263089.1|EV263089
EST:     TAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTG                         TTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCGCAT
genomic: TAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTGgtatgtacac ... cttagtgcagTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCACAT
EST: gi|192314970|gb|FK010788.1|FK010788
EST:     TAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTG                         TTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCACAT
genomic: TAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTGgtatgtacac ... cttagtgcagTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCACAT
EST: gi|13240177|gb|BG359486.1|BG359486
EST:     TAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTG                         TTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCACAT
genomic: TAGTCAACTGTGTTGGGGCTCTAAATTACAAATGTTTCCTTCTTTTCTTGgtatgtacac ... cttagtgcagTTCTACACTTTTCTTGAGACGACTCTAGTGACTGCATCCTTGCTGCCACAT