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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCTTGCAGTTAGTTATTTCGGAATGTAAACCAAAGACAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGAgtaagctttgtgcttaattttgccccatttgtatttgttacaggtgtttatgattgttcttttattattttgtgattttagcttatggggtttgctgtgtttttttttctaatgaag

Basic information

species Glycine max
transcript GLYMA01G29420.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G29420.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 2
AGGCCTTGCAGTTAGTTATTTCGGAATGTAAACCAAAGACAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGAgtaagctttgtgctta---------attttgccccatt---tgtatttgttacaggtgtt-tatgattgttcttttattattttg-tgattttagctta-------tggggtttgctgtgtttttttttctaatgaag----------------------------------------------------
|||| |||||||||||  | |||||||| || |||||| |||||||||||||| | ||||||||||| ||||| |  |||||||||| ||| || |  ||          ||| |      ||   | | ||| | | |||  |  |||| |   | ||| | |||   | ||  |||   |||       || | |||| || |||  |||||  || |||                                                     
AGGCTTTGCAGTTAGTCTTGTCGGAATGCAAGCCAAAGGCAAAGATTGTTGACATCTGCGAGAAAGGCGATTCATTCATTAGAGAgtgagccttctttttttacatagacattatattatgttgaatatttttttgataggcataatatgttcaatatttgagtatgccgatgtattttatttagatttcttgtgttttgttgggttgatttttgcaaagaaaaaggctttatcatattgttataatctataggttttgttgtttatgtatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209710685|gb|BW676559.1|BW676559
EST:     AAGACAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGA                         GCAAACTGGTAACATGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
genomic: AAGACAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGAgtaagctttg ... tctaatgaagGCAAACTGGTAACATGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
EST: gi|192326702|gb|FK017329.1|FK017329
EST:     AAGACAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGA                         GCAAACTGGTAACATGTACAAGAATGTGAAGAGGTAGATTGAGAGAGGTGT
genomic: AAGACAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGAgtaagctttg ... tctaatgaagGCAAACTGGTAACATGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
EST: gi|298195396|gb|HO039227.1|HO039227
EST:     AAGACAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGA                         GCAAACTGGTAACATGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
genomic: AAGACAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGAgtaagctttg ... tctaatgaagGCAAACTGGTAACATGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
EST: gi|13478014|gb|BG507662.1|BG507662
EST:     AAGACAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGA                         GCAAACTGGTAACATGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT
genomic: AAGACAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGAgtaagctttg ... tctaatgaagGCAAACTGGTAACATGTACAAGAATGTGAAGAGGAAGATTGAGAGAGGTGT