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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGTCAAAGTTAGACTTCAAGCAGAAGGAAAATTACCTCCTGGTGTTCCCAGGCGGTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAGgtctgtgctatccaatataatttatggaagagaaaaacatatttggttcggtttagttgttattatttttattctaacctacatcgatcatctaacacacag

Basic information

species Glycine max
transcript GLYMA01G27120.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G27120.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 4
TCTTGTCAAAGTTAGACTTCAAGCAGAAGGAAAATTACCTCCTGGTGTTCCCAGGCGGTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAGgt------ctgtgctatccaatataatttatggaagagaaaaac-atatttggttcgg--tttagttgtt-attatttttattctaacctac-atcgatcatctaacacacag
 ||||| |||||| |||||||| | ||||||||||| || |||||||| || || || || || ||||| || ||||||||||| ||||| |||||||||||         |||  |   ||  |  ||||  |  ||       ||| ||  ||     || | |||||   | | ||||| | |   ||| |      |||||| |   ||
CCTTGTGAAAGTTCGACTTCAATCTGAAGGAAAATTGCCACCTGGTGTGCCAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAGgtggaacatcttgcccttatatgcatattatttattagtttctttataatttatttaagtttcatttgtttgatgtctttatccaattttactaatttgtatctaaaatttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340376|gb|GR858501.1|GR858501
EST:     CCAGGCGGTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAG                         GAAGGAGTTGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAAT
genomic: CCAGGCGGTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAGgtctgtgcta ... taacacacagGAAGGAGTTGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAAT
EST: gi|254340375|gb|GR858500.1|GR858500
EST:     CCAGGCGGTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAG                         GAAGGAGTTGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAAT
genomic: CCAGGCGGTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAGgtctgtgcta ... taacacacagGAAGGAGTTGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAAT