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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTACAGGTTAAATCTTCTCCACCCGTCCAGCCTATTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgagaaagtttttatctgaaatatgaatcagttaaattaatcacatcctaattatatggaattgcatatgcag

Basic information

species Glycine max
transcript GLYMA01G22680.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G22680.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0011g02820.t01 (Vitis vinifera), 5'ss of exon 3
GATTTACAGGTTAAATCTTCTCCACCCGTCCAGCCTATTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgagaaagt----------ttttatctgaaatatgaatcag-ttaaattaatcacatcct-aattatatggaattgcatatgcag
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GATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAGgtggataaaaggatgacccaccttttttatatatgtgatgcatcaaatcaagtaaacttgattctgaattaaccttaatttcttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209708362|gb|BW683952.1|BW683952
EST:     CACCCGTCCAGCCTATTCCACAAGTCAACAATGACCCAGCTATTATTCAG                         TCTCACTATCCTCACCCGGTCTCTACATCTACAAGTTTGCCTTCTGCTGTA
genomic: CACCCGTCCAGCCTATTCCACAAGTCAACAATGACCCAGCTATTATTCAGgtggatgaga ... gcatatgcagTCTCACTATCCTCACCCGGTCTCTACATCTACAAGTTTGCCTTCTGCTGTA