Sequence
atgc intronic sequence ATGC exonic sequenceGTTGGAATGGTGATCCTTGTGCTCCTACTAATTGGGATGCTTGGGAGGGAGTTACCTGCCGTACGAGTAAGAATAGTACCACTCTGGTGATAAGTCAAATgtatgcattcctttccattctcttagtttatgcaattgatcttctaattggttatgggaaagaaaattatggctacgtaaagtctcttaataattgacat...
Basic information
species | Glycine max |
transcript | GLYMA01G22470.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G22470.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G25570.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTGGAATGGTGATCCTTGTGCTCCTACTAATTGGGATGCTTGGGAGGGAGTTACCTGCCGTACGAGTAAGAATAGTACCACTCTGGTGATAAGTCAAATgtatgcattcct-ttccattctcttagtttatgcaattgatcttctaattggtta---tgggaaagaaaattatggctacgtaaagtctctta-ataattgacat
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GTTGGAATGGTGATCCTTGTGCTCCTACTAGCTGGGACGCTTGGGAGGGAGTCTCATGCCGGCCAAATTCCCAAGGATCTGCCCTTGTGATATTTCAAATgtgagtctcacggttgcatacagtaaaccgacctggcttgtcttattcactttcacattgtgtatgcaagctgaaaattagtaaagttgattagacaaat-----
upper sequence: GLYMA01G22470.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0011g03060.t01 (Vitis vinifera), 5'ss of exon 3
GTTGGAATGGTGATCCTTGTGCTCCTACTAATTGGGATGCTTGGGAGGGAGTTACCTGCCGTACGAGTAAGAATAGTACCACTCTGGTGATAAGTCAAATgtatgcattcctttccattctcttagtttatgcaattgatcttctaattggttatgggaaagaaaattatggctacgtaaagtctcttaataattgacat---
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GTTGGAATGGTGATCCTTGTGCTCCTACTAATTGGGATGCTTGGGAGGGTGTTACTTGCCATCCCAACAAGAAAGAAACTGCCCTTGTGGTATCTCAAATgtaagcactttcttctctttaaccatattttatcactaatgtctga---gagcgtggaatacatttaaatggttatttatagatatgattcaggtagaagattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207805274|gb|GD777280.1|GD777280EST: GTTACCTGCCGTACGAGTAAGAATAGTACCACTCTGGTGATAAGTCAAAT TGATTTGGGCAGTCAAGGCTTGAAAGGGTCCATAAGTGATCAGATTAGTCT
genomic: GTTACCTGCCGTACGAGTAAGAATAGTACCACTCTGGTGATAAGTCAAATgtatgcattc ... ttcatttcagTGATTTGGGCAGTCAAGGCTTGAAAGGGTCCATAAGTGATCAGATTAGTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGGAATGGTGATCCTTGTGCTCCTACTAATTGGGATGCTTGGGAGGGAGTTACCTGCCGTACGAGTAAGAATAGTACCACTCTGGTGATAAGTCAAATgtatgcattcctttccattctcttagtttatgcaattgatcttctaattggttatgggaaagaaaattatggctacgtaaagtctcttaataattgacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaagaa