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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTAAGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAGgtgagttaatatactatgttattgagcactgttgtttatattaacattatttgactattcttgttcttggggcttttccactacttgatttgattattgt...

Basic information

species Glycine max
transcript GLYMA01G20670.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213598569|gb|DB958153.1|DB958153
EST:     AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAG                         GCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
genomic: AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAGgtgagttaat ... aattatgcagGCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
EST: gi|20448498|gb|BQ252622.1|BQ252622
EST:     AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAG                         GCAAGTGCAACTCCTAC
genomic: AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAGgtgagttaat ... aattatgcagGCAAGTGCAACTCCTAC
EST: gi|213598669|gb|DB964263.1|DB964263
EST:     AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAG                         GCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
genomic: AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAGgtgagttaat ... aattatgcagGCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
EST: gi|193672030|gb|FK616300.1|FK616300
EST:     CTACTTCAACTGCTCCCTTTCCAGTTAAG                         GCAAGTACAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCC
genomic: CTACTTCAACTGCT-CC-TT-CAGTTAAGgtgagttaat ... aattatgcagGCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCC
EST: gi|298187219|gb|HO034368.1|HO034368
EST:     AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAG                         GCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
genomic: AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAGgtgagttaat ... aattatgcagGCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
EST: gi|151395622|gb|EV265499.1|EV265499
EST:     AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAG                         GCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
genomic: AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAGgtgagttaat ... aattatgcagGCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
EST: gi|192323620|gb|FK017486.1|FK017486
EST:     AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAG                         GCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
genomic: AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAGgtgagttaat ... aattatgcagGCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
EST: gi|18040534|gb|BM308828.1|BM308828
EST:     AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAG                         GCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
genomic: AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAGgtgagttaat ... aattatgcagGCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
EST: gi|208300486|gb|GE100251.1|GE100251
EST:     AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAG                         GCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
genomic: AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAGgtgagttaat ... aattatgcagGCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
EST: gi|9986013|gb|BE660019.1|BE660019
EST:     AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAG                         GCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
genomic: AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAGgtgagttaat ... aattatgcagGCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
EST: gi|298169814|gb|HO018438.1|HO018438
EST:     AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAG                         GCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
genomic: AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAGgtgagttaat ... aattatgcagGCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
EST: gi|9986012|gb|BE660018.1|BE660018
EST:     AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAG                         GCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT
genomic: AGAGTTCATCTGGTGAAGGATCTACTACTTCAACTGCTCCTTCAGTTAAGgtgagttaat ... aattatgcagGCAAGTGCAACTCCTACTTCAACCTCTGTGTCTGCTGCGCCTCAAGCTCCT