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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATGACACATTACTCCAGAATCTGCACAATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCCATATATGATTTCAAGTCCAGTTCACGTACAGGATACAGgttaaattttaagccatcttgactcttgagtaactacccgaaattttgtagagtttaaaaattgttctcttgggacagtgaccagggaacactattttgg...

Basic information

species Glycine max
transcript GLYMA01G09660.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G09660.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G147430_T02 (Zea mays), 5'ss of exon 3
ACTATGACACATTACTCCAGAATCTGCACAATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCCATATATGATTTCAAGTCCAGTTCACGTACAGGATACAGgttaaattttaa-gccatcttgactcttgagtaactacccgaaattttgtagagtttaaaa-attgttctcttggg-acagtgaccagggaacactattttgg
||||||||||| | ||  | ||| | ||   | | |||||||||| | ||||||| ||||| ||||||||||||||||| || |  || || || || |||| || | | |  || |||||          | || | |  ||   ||   |    ||    ||  |||  |||   |   | |      |     |    | 
ACTATGACACACTGCTGGAAAATATACATGGTCTGAAGGAAGGAAGGTCAGTTCAGGTTCCAATATATGATTTCAAGTCAAGCTGCCGGACTGGTTATAGgtaaattatcactgctatctt----tcaatattacaagcttaagccttaaggtccatattgcatcattcatttgaatatcataatttcttatgtgcaaacag-

upper sequence: GLYMA01G09660.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 3
ACTATGACACATTACTCCAGAATCTGCACAATTTAAAGGAAGGAAAGCCAGTTCAAGTTCCCATATATGATTTCAAGTCCAGTTCACGTACAGGATACAGgttaaattttaagccatcttg-actcttgagtaactacccgaa-----attttgtag---agtttaaaaattgttctcttgg-gacagtgaccagggaacactattttgg-----------------------------------------------------------------------
||||||||||||| ||| |||||||  |  | ||||||||||||||||  ||| | ||||| || |||||||| |||||||| || |||   |||||||||| |    | | |  ||  || | | |  | | |||     |      ||||||||    |  | || ||     | ||||| | |  |   ||   ||   |  | |                                                                         
ACTATGACACATTGCTCAAGAATCTTGAAGACTTAAAGGAAGGAAAGCAGGTTGAGGTTCCTATTTATGATTTTAAGTCCAGCTCTCGTGTTGGATACAGgtaatgcgtgacgtgattgtgcagtttccatttactgattcagtcatcattttgtactttatctaaacaaacaaccacttggtgtccattgtcacaaaagtttgatattacattcacatcagcatggtttctgtttattccactgaagcattgtttttaatgccatgatttaatttgctag