1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCAGCTGTTTTGTTTAATATCGAGGATCATGAAGTGGAAAGTTACCTGGAATTAGTTAAGAAGCATGCATCTGGTTTACTTCAAGATATGAGGAAAGATGgtatatttcttcaaagaaactaattaatcatatagtgcttctgaatcctgttgcgtatatgtaacatgttctgtgtgattag
species | Glycine max |
transcript | GLYMA01G06630.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CATCTGGTTTACTTCAAGATATGAGGAAAGATG ATTATGCAATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTCEST: gi|18848595|gb|BM567752.1|BM567752
genomic: CATCTGGTTTACTTCAAGATATGAGGAAAGATGgtatatttct ... gtgtgattagATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
EST: ATTAGTTAAGAAGCATGCATCTGGTTTACTTCAAGATATGAGGAAAGATG ATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTCEST: gi|193593283|gb|FK545801.1|FK545801
genomic: ATTAGTTAAGAAGCATGCATCTGGTTTACTTCAAGATATGAGGAAAGATGgtatatttct ... gtgtgattagATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
EST: CATCTGGTTTACTTCAAGATATGAGGAAAGATG ATTATGCAATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTCEST: gi|192321870|gb|FK013234.1|FK013234
genomic: CATCTGGTTTACTTCAAGATATGAGGAAAGATGgtatatttct ... gtgtgattagATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
EST: ATTAGTTAAGAAGCATGCATCTGGTTTACTTCAAGATATGAGGAAAGATG ATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTCEST: gi|254324255|gb|GR840572.1|GR840572
genomic: ATTAGTTAAGAAGCATGCATCTGGTTTACTTCAAGATATGAGGAAAGATGgtatatttct ... gtgtgattagATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
EST: ATTAGTTAAGAAGCATGCATCTGGTTTACTTCAAGATATGAGGAAAGATG ATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTCEST: gi|22930913|gb|BU548052.1|BU548052
genomic: ATTAGTTAAGAAGCATGCATCTGGTTTACTTCAAGATATGAGGAAAGATGgtatatttct ... gtgtgattagATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
EST: CAAGATATGAGGAAAGATG ATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
genomic: CAAGATATGAGGAAAGATGgtatatttct ... gtgtgattagATTATGCGATAAAGGAGAAGCCACTGCAAGTTGAGGACATGCAAGGAGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGCTGTTTTGTTTAATATCGAGGATCATGAAGTGGAAAGTTACCTGGAATTAGTTAAGAAGCATGCATCTGGTTTACTTCAAGATATGAGGAAAGATGgtatatttcttcaaagaaactaattaatcatatagtgcttctgaatcctgttgcgtatatgtaacatgttctgtgtgattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG