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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgttttactagacttttaacagctatatattataataactcgtatgatttaattgtttgcttacatttatctctggttctatag

Basic information

species Glycine max
transcript GLYMA01G05740.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G05740.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g33920.1 (Oryza sativa), 5'ss of exon 3
TGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgttttactagacttttaacagctatatattataataactcgtatg-atttaattgtttgcttacatttatctctggttctatag
|||||||||| |||||||||||||| |||||  | || ||||| |||||||| |||||| |||||||||||||  | ||||||| ||| || ||||| ||||  ||   ||   |   |  | |     || | | ||        ||   | |  | || |  |||  |  | || |   |||  ||
TGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagt---acataatgctagatattctgatgtgaaaactttcaagatctgtattgtggtcttattagctgcaactgtaactctgcag

upper sequence: GLYMA01G05740.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G152552_T01 (Zea mays), 5'ss of exon 3
TGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgttttactagacttttaacagctatatattataataactcgtatgatttaattgtttgcttacatttatctctggttctatag----
|||||||||| |||||||| ||||| ||||| || || | ||| |||||||| |||||| | |||||||||||  | ||||||| ||| || ||||||||||  ||   | |||    |  |||  | | |  | |       |   |  | |||||   |  |   ||  ||  |   | || ||     
TGAGGCCTGCTGAGTACAAAAGGTCCAGGTTGCCTAGGAGCCGCAGGACTGTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagta--aatagggggtggacatat-tgtggtgtggaggtccaggttctgtaatttcgtagtcttatgaattacaactactgtatgcag

upper sequence: GLYMA01G05740.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G820996_T01 (Zea mays), 5'ss of exon 3
TGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgttttactagacttttaacagctatatattataataactcgtatgatttaattgtttgcttacatttatctctggttc-tatag
|||| ||||| |||||||||||||| |||||  | || ||||| |||||||| |||||| | |||||||||||  | ||||||| ||| || ||||||||||  ||   | ||||       ||  | | | || | | | | |      | | ||  | |  |   ||      ||  |   | |||
TGAGACCTGCCGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTTAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagta--aatagaggcg-ggcatat-tgtgttgtgaaagcccaggatctgtcatcttgtaatcttatgagctactactctatgtag

upper sequence: GLYMA01G05740.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G032564_T01 (Zea mays), 5'ss of exon 3
TGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgttttactagacttttaacagctatatattataataactcgtatgatttaattgtttgcttacatttatctctggttctatag
|||| ||||| |||||||||||||| |||||  | || ||||| |||||||| |||||| |||||||||| ||| | ||||| |  || || || |||||||     ||  |   |   | |   |  |  |||  ||| | |  |  |   || |   |  | | |||   |||| |         
TGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattctttcgcaactcatgcccgtccattgaaatgattaatg-gtgatactaagtcacctgcat--gtctcag---------

upper sequence: GLYMA01G05740.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G152573_T04 (Zea mays), 5'ss of exon 3
TGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgttttactagacttttaacagctatatattataataactcgtatgatttaattgtttgcttacatttatctctggttctatag
|||| ||||| |||||||||||||| |||||  | || ||||  |||||||| || ||| |||||||||| ||| | ||||| | ||| || ||||||||||     ||  |   | |   |    |   | ||  ||| | | || |||   | |  | |||   ||     ||| |         
TGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCAAAGGACTGTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattctttcgcatcccatgcttgcctgtttaaatgatt-gtttgagaaactaatctgcccgcac--gcctcag---------

upper sequence: GLYMA01G05740.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0026g02410.t01 (Vitis vinifera), 5'ss of exon 3
TGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgttttactagacttttaacagctatatattataataactcgtatga-----tttaa---ttgtttgcttacatttatctctggttctatag------------
| || |||||||| ||||||||||| || ||||| || |||||||||||||| |||||||| ||||| || || || |||||| |||| || ||||| |||| ||||     ||  | |   |||   |   | |||  |  || ||||      |||||       ||   |  |  | ||| |  || |  |             
TAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagcaaagtttctgttcagtgctcattcatatcatttcatatggaaagttttaagatcaactttgctggacatgtctttattttttcaattggttttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192334053|gb|FK026210.1|FK026210
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|23731114|gb|BU763668.1|BU763668
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|7147580|gb|AW509502.1|AW509502
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|209719541|gb|BW669178.1|BW669178
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|7147442|gb|AW509364.1|AW509364
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|31461069|gb|CD403097.1|CD403097
EST:     GTCAACCGTGCATATGGTGGAGTTTTGTCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCCAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|15286751|gb|BI470642.1|BI470642
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|254319919|gb|GR830943.1|GR830943
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|23051191|gb|BU577064.1|BU577064
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|254329218|gb|GR833590.1|GR833590
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTTTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|21601478|gb|BQ611809.1|BQ611809
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|192332431|gb|FK024192.1|FK024192
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|193701027|gb|FK636846.1|FK636846
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGTGAG                         GATTATCCGAGCCTTCTTAGTTGA
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGA
EST: gi|120531970|gb|EH260103.1|EH260103
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|5509773|gb|AI856331.1|AI856331
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|209706776|gb|BW678145.1|BW678145
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|209706777|gb|BW678146.1|BW678146
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|213601413|gb|DB956705.1|DB956705
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|31305702|gb|CD390905.1|CD390905
EST:     GTCAACCGTGCATATGGTGGAGTTTTGTCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|21602338|gb|BQ612669.1|BQ612669
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|5510165|gb|AI856549.1|AI856549
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|193538636|gb|FK495940.1|FK495940
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|213616852|gb|DB977051.1|DB977051
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|193513050|gb|FK469576.1|FK469576
EST:     GCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|254319920|gb|GR830944.1|GR830944
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|193598502|gb|FK553716.1|FK553716
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|22931800|gb|BU548939.1|BU548939
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|31461877|gb|CD403905.1|CD403905
EST:     GTCAACCGTGCATATGGTGGAGTTTTGTCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|120534700|gb|EH262833.1|EH262833
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|192334054|gb|FK026211.1|FK026211
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|31561032|gb|CD486870.1|CD486870
EST:     GTCAACCGTGCATATGGTGGAGTTTTGTCTGGAAGTGCCGTCAGGCAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|254344850|gb|GR855614.1|GR855614
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|208251979|gb|GE045138.1|GE045138
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAG
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAG
EST: gi|31311062|gb|CD396265.1|CD396265
EST:     GTCAACCGTGCATATGGTGGAGTTTTGTCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCCAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|31307492|gb|CD392695.1|CD392695
EST:     GTCAACCGTGCATATGGTGGAGTTTTGTCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCCAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|31464883|gb|CD406911.1|CD406911
EST:     GTCAACCGTGCATATGGTGGAGTTTTGTCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|213611911|gb|DB958921.1|DB958921
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|151408395|gb|EV278203.1|EV278203
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|213590841|gb|DB975083.1|DB975083
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTATC-TAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCT-TCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCT
EST: gi|31459706|gb|CD401734.1|CD401734
EST:     GTCAACCGTGCATATGGTGGAGTTTTGTCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|31459787|gb|CD401815.1|CD401815
EST:     GTCAACCGTGCATATGGTGGAGTTTTGTCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|31308450|gb|CD393653.1|CD393653
EST:     GTCAACCGTGCATATGGTGGAGTTTTGTCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|10237092|gb|BE805980.1|BE805980
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTNTCCGAGCCTTCTTAGTTGAAGAGCANAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|151405542|gb|EV275356.1|EV275356
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|193401336|gb|FK369215.1|FK369215
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|209719542|gb|BW669179.1|BW669179
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|16997249|gb|BM086621.1|BM086621
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|209697014|gb|BW667004.1|BW667004
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|31306394|gb|CD391597.1|CD391597
EST:     GTCAACCGTGCATATGGTGGAGTTTTGTCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT
EST: gi|19271084|gb|BM887340.1|BM887340
EST:     GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAG                         GATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGCCTT
genomic: GTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgtttta ... ggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCGTCAGGGAGAGgtttgttttactagacttttaacagctatatattataataactcgtatgatttaattgtttgcttacatttatctctggttctatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG