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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTAATCCGCGTTTATCAGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGgttctaaaactgttaccttgtataaattatatcaactttacataaacttctgaaaaggtaaaatgaattaagttttcatctcaagttaatatcaacctat...

Basic information

species Glycine max
transcript GLYMA01G04920.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G04920.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0026g01590.t01 (Vitis vinifera), 5'ss of exon 4
AACTAATCCGCGTTTATCAGACATGCCTATTGTTTATGCTAGTGATGCCTTCTTGAAATTGACAGgttctaaaactgttaccttgtataaattatatcaactttacataaacttctg-aaaaggtaaaatgaattaagttttca---tctcaagtt--aatatcaacctat----------------------------------------------
 ||| |||| | |||| | || ||||| || |||||||| |||||||||||||| |||||||||||| || |||   |||    |    |   | ||  | ||  | ||  | | || |  |  |   ||   || || |   |   |||  |  |   |||| |   |||                                              
GACTGATCCCCATTTACCTGAGATGCCAATCGTTTATGCAAGTGATGCCTTCTTAAAATTGACAGgtgctcaaagctttatagagctatacacacattgatttgtcctagccctttgtaggaaatttcatagtttgagctagaaagatctggaccttggatattatgatatattaaacaatcaagcttcttactaatccttatttctattttaatag