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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagtttaatatgttgcagaatgtttttctgactaccttatgccagtgtctaacatccttgtatattacag

Basic information

species Glycine max
transcript GLYMA01G04570.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G04570.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g12580.1 (Oryza sativa), 5'ss of exon 3
CTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttga-gtttaatatgttgcag---aatgtttttctgactaccttatgccagtgtctaacat-----ccttgtatattacag
||||||||||||||||||||||||||||||||| ||||| ||||||| |||||| || |||||||||||||| ||||| || || ||||| || |  ||||||||    || |    |||| |   ||    | |  |  || |  ||     || || ||||      |    || ||| ||
CTACGATGAATGCTTGAGAAAGTATGGAAATGCAAATGTATGGAAATACTTTACAGACTTGTTTGATTATTTGCCTCTCACAGCTCTTATAGAAAACCAGgtttgttacttgactaattgcggtttaactgatataggcttatccaatat--atgcctgacatgtgaatcacccattttatag

upper sequence: GLYMA01G04570.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g37660.1 (Oryza sativa), 5'ss of exon 3
CTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagtttaatatgttgcagaatgtttttctgactaccttatgc-cagtgtctaac--atccttgtatattacag-------------------------------
||| || ||||||||  | |||||||||||||| ||||| ||||| | ||| || || |||||||||||||| ||||| || || ||| | || |  |||||| |   ||      ||||  ||||||| |   | ||   |   |   |     | |   ||| |||||||  ||                                
CTATGACGAATGCTTACGGAAGTATGGAAATGCAAATGTTTGGAAGTACTTCACGGACTTGTTTGATTATTTGCCTCTCACAGCTCTTGTAGAAAACCAGgttagctcttt-----ttgccaaatgtttgttctattaatatggacattgaactcagcttgtccatgtatatggcatacctgacaagaggaaaaatttcattttgtag

upper sequence: GLYMA01G04570.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G119546_T01 (Zea mays), 5'ss of exon 3
CTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagtttaa--tatgttgcagaatgtt--------tttctgactaccttatgccagtgtctaacat--ccttgtatattacag-------
||| |||||||||||| | || ||||||||||| ||||| ||||| | |||||| || |||||||||||||| ||||| || || ||||| || | |||||||||   |     ||||| | ||    ||         || ||| |   || || |  |  ||  ||    ||   | ||| ||        
CTATGATGAATGCTTGCGGAAATATGGAAATGCAAATGTGTGGAAGTACTTTACAGACTTGTTTGATTATTTGCCTCTCACAGCTCTTATAGAAAATCAGgtttgttctctggttatgtcgtagcgcattgatattaacttgtgattctgttctgtctatacctggcaaaagctgaaaaattccattttgcag

upper sequence: GLYMA01G04570.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G038195_T01 (Zea mays), 5'ss of exon 3
CTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttg-agtttaatatgttgcag--aatgtttttct-gactacct-------tatgcc--agtgtctaacatccttgtatattacag
||| ||||||||||| ||||| ||||||||||| ||||| ||||| |  ||||| || |||||||||||||| ||||| || || ||||| || | |||||| || |  ||||| ||||   |   ||| | || | | ||   |       ||||||      | | | |  | |  || | ||||
CTATGATGAATGCTTAAGAAAATATGGAAATGCAAATGTATGGAAGTATTTTACAGACTTGTTTGATTATTTGCCTCTCACAGCTCTTATAGAAAATCAGgtatgcatcttaatttgttatggttgatgctattataggcttgttgaatatatatgcctttacatttgagaaacatccatttcacag

upper sequence: GLYMA01G04570.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G133464_T01 (Zea mays), 5'ss of exon 3
CTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttg-------agtttaatatgttgcagaatgtt------tttctgactaccttatgccagtgtctaacatccttgtatattacag
||| ||||||||||| ||||| ||||||||||| ||||||||||| |  ||||| || |||||||||| ||| ||||| || || ||||| || | |||||| ||       | |||  |||| |  | | ||||      || |||| ||  |          | | | |  | |  || || |||
CTATGATGAATGCTTAAGAAAATATGGAAATGCAAATGTCTGGAAGTATTTTACAGACTTGTTTGATTTTTTGCCTCTCACAGCTCTTATAGAAAATCAGgtatgcagctcaattttgttatggttgatactgttataggcttgctgaatatatccctttgacatttgagaaacatccattttgcag

upper sequence: GLYMA01G04570.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G69960.1 (Arabidopsis thaliana), 5'ss of exon 3
CTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagtttaatatgttgcagaatgtttt-------tctgactaccttatgccagtgtctaacatccttgtat--attacag------------------
 || |||||||| ||||| || ||||||||||| ||||| |||||   ||| || ||| | ||||||||| | || || || || |||||||||||||||||     ||||| |   |   ||  |||||       |  ||| | ||  |  | || |||    |  | |  |  | |||||                  
TTATGATGAATGTTTGAGGAAATATGGAAATGCTAATGTATGGAAGCACTTCACTGATCTTTTTGATTATCTTCCACTTACAGCTCTTATTGAGAGTCAGgt----atttaaaaaactaatgagcgttttcactaccttagacaatctcttctctgtttctgctgttttggacttgactacagaactctttttttctgtag

upper sequence: GLYMA01G04570.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G10430.1 (Arabidopsis thaliana), 5'ss of exon 3
CTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagtttaatatgttgcagaatgtttttctgactaccttatgccagtg------tctaacatccttgtatattacag
 || || ||||||||||| ||||| |||||||| || |||||||| |  ||||| ||  | || |||||| | ||||| |||||||| || |||||||||||| ||| |   | | |  |||   || |||   ||  | || |   |||       | | || || |   || ||  ||
TTATGACGAATGCTTGAGGAAGTACGGAAATGCTAACGTCTGGAAGTATTTTACAGACCTTTTCGATTATCTTCCTCTTACCGCCCTCATAGAGAGTCAGgttagagct-gttctttctcagttggtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtag

upper sequence: GLYMA01G04570.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
CTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagtttaatatgttgcaga-atgtttttctgactacctta-tgccagtgtctaacatccttgtatattacag-------
 || || |||||||||||||| ||||||||||||||||||||||| |  ||||||||  | ||||||||| |||| || || ||||| |||||||||||||||||||||    ||||| |  |  | ||  | |||  |  ||  || | |   || ||| || | |||  |  |        
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttatgttttactttgataaatttcctgactgatactgacagccatatattgtttataccatag

upper sequence: GLYMA01G04570.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ18262 (Selaginella moellendorffii), 5'ss of exon 3
CTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagtttaatatgttgcagaatgtttttctgactaccttatgccagtgtctaacatccttgtatatt-acag
|||||| |||||| | || || |||||||| || ||||||||||| | ||| ||||||||||| ||||| ||||| || || || || |||||||  || ||   |||||              |||||||||      |||  || || || | | ||  | |     |  |||
CTACGACGAATGCCTTAGGAAATATGGAAACGCGAATGTCTGGAAGTACTTCACCGATTTGTTCGATTACTTACCACTCACGGCGCTGATTGAGAACCAAgt--aagtttc-------------tgtttttct------ctttcgcaag-gtttgaaatgttcgcgggctcgcag

upper sequence: GLYMA01G04570.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ22002 (Selaginella moellendorffii), 5'ss of exon 3
CTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagtttaatatgttgcagaatgtttttctgactaccttatgccagtgtctaacatccttgtatatt-acag
|||||| |||||| | || || |||||||| || ||||||||||| | ||| ||||||||||| ||||| || || || || || || |||||||  || ||   |||||              |||||||||      |||  || || || | | ||  |||     |  |||
CTACGACGAATGCCTTAGGAAATATGGAAACGCGAATGTCTGGAAGTACTTCACCGATTTGTTCGATTACTTGCCACTCACGGCGCTGATTGAGAACCAAgt--aagtttc-------------tgtttttct------ctttcgcaag-gtttgaaatgtttgcgggctcgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192317574|gb|FK011308.1|FK011308
EST:     TTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAG                         ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
genomic: TTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagttt ... tatattacagATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
EST: gi|9565776|gb|BE475285.1|BE475285
EST:     TTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAG                         ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
genomic: TTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagttt ... tatattacagATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
EST: gi|11274240|gb|BF324608.1|BF324608
EST:     TTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAG                         ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
genomic: TTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagttt ... tatattacagATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
EST: gi|209721241|gb|BW659229.1|BW659229
EST:     TACCGA-TTGTTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAG                         ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
genomic: TACCGATTTG-TTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagttt ... tatattacagATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
EST: gi|14260009|gb|BG882917.1|BG882917
EST:     TTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAG                         ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
genomic: TTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagttt ... tatattacagATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
EST: gi|209728097|gb|BW655332.1|BW655332
EST:     TTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAG                         ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
genomic: TTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagttt ... tatattacagATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
EST: gi|6134267|gb|AW132660.1|AW132660
EST:     NTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAG                         ATNNTCTGTTTGCATGGAGGTCTCTCACCATCTNTGGATACACTTGATAAT
genomic: TTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagttt ... tatattacagATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
EST: gi|193425317|gb|FK388590.1|FK388590
EST:     TTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAG                         ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
genomic: TTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagttt ... tatattacagATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
EST: gi|254316229|gb|GR827766.1|GR827766
EST:     CGATTTGTTTGATTATTTACCTCTGACCGCCTTTATTGAGAGTCAG                         ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
genomic: CGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagttt ... tatattacagATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
EST: gi|209721240|gb|BW659228.1|BW659228
EST:     TTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAG                         ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT
genomic: TTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGgtttgagttt ... tatattacagATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAAT