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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTGGGTAACTGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAATTGGAAATTTATGGGTTGGTGAATCTGGGCATGAGAATGAAAAGgtataagatgtggaagattttaccttgtctgtgtacagcacaacactaacacacacaaacatatatttatacatattatagatacgtcaaatttcatttt...

Basic information

species Glycine max
transcript GLYMA01G04400.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G04400.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g32910.1 (Oryza sativa), 5'ss of exon 3
AAAGTGGGTAACTGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAATTGGAAATTTATGGGTTGGTGAATCTGGGCATGAGAATGAAAAGgtataagatgtggaagattttaccttgtctgtgtacagcacaacactaacacacacaaacatatatttatacatattatagatacgtca--aatttcatttt-------
 || ||||| |||||||||||||||||||| || || ||||||||||| ||||| |  || | | | |||||||  ||||| ||  |||| ||  |||||||| |     |      | |||  |  |   |||| | || ||  | |  ||  |||  | |  || |   ||| |||| ||||| | |  |||   |  ||       
GAAATGGGTGACTGGTGCATTTGCTGGTCACACTGCTGTTTGCTTGAAAGATGAGAACGGCACTCTCTGGGTTGCAGAATCAGGCTATGAAAACAAAAAGgtacat----ttatgtttcttatttcat---tgtataacataattccactacctacattcttgaatctt--catcttatggatacataagcaatgcaagattaacagtt

upper sequence: GLYMA01G04400.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os09g22440.1 (Oryza sativa), 5'ss of exon 3
AAAGTGGGTAACTGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAATTGGAAATTTATGGGTTGGTGAATCTGGGCATGAGAATGAAAAGgtataagatgtggaagattttaccttgtctgtgtacagcacaacactaacacacacaaacatatatttatacatattatagatacgtcaaatttcatttt--
 || ||||| |||||||| |||||||| || || |||||||||||||| ||||| |  ||  |  | |||||||  ||||| ||   ||| ||||||||||||||   ||  |||   |    | | |         |||  | | |  |  |||     |||| | |      |||  | ||   |||  |   |||    
GAAATGGGTGACTGGTGCGTTTGCTGGGCACACCGCAGTTTGCTTGAAAGATGAGAAGGGTGAAGTTTGGGTTGCGGAATCAGGCTTTGAAAATGAAAAGgtatagtttgctgaactgtcgtgcgtcttgaaagtttgcatgatattgtc-tacatgtg-atatgtgtgctagcattgaatatcgatcatgtcctattgctt

upper sequence: GLYMA01G04400.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G70160.1 (Arabidopsis thaliana), 5'ss of exon 3
AAAGTGGGTAACTGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAATTGGAAATTTATGGGTTGGTGAATCTGGGCATGAGAATGAAAAGgtataagatgtggaagattttaccttgtctgtgtacagcacaacactaacacacacaaacatatatttatacatattatagatacgtcaaatttcatttt
 || ||||| ||||| || |||||||||||||| || ||||| |||||||||||  | || ||| | |||||||||||||| || |||||||| |||||||||   ||  |  |   ||| |    ||  ||| | || |  |     | | |    |  || | |||   ||||                         
GAAATGGGTGACTGGGGCTTTTGCTGGTCATACTGCTGTTTGTTTGAAGGATGATTTGGGGAATCTTTGGGTTGGTGAATCAGGACATGAGAACGAAAAGgta---gacctaaacattttga---agttagtggatagaaaga----gagatattttactatctttttccccatag------------------------

upper sequence: GLYMA01G04400.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0026g00920.t01 (Vitis vinifera), 5'ss of exon 3
AAAGTGGGTAACTGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAATTGGAAATTTATGGGTTGGTGAATCTGGGCATGAGAATGAAAAGgtat---------aagatgtggaagattttacc-ttgtctgtgtacagcacaacactaacacacacaaacatatatttatacatattatagatacgtcaaatttcatttt
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||   || ||| | ||||||||||| || ||||| ||||| ||||||||||         ||  | | |||||    |   ||| |    | ||  | | || || |    | ||    |  |  ||   || ||  | |   || |          
AAAATGGGTAACAGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAGAGGGTAATCTTTGGGTTGGTGAGTCGGGGCACGAGAACGAAAAGgtatgctagcagtaatgtattgaagaaaagaaaattgacaacatgcacaaaagcagtatcgtttataatttcacttgaatttctagtacggttgtatcca----------

upper sequence: GLYMA01G04400.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S307_69V6.1 (Physcomitrella patens), 5'ss of exon 3
AAAGTGGGTAACTGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAATTGGAAATTTATGGGTTGGTGAATCTGGGCATGAGAATGAAAAGgtata----agatgtggaagat-tttaccttgtctgtgtacagcacaacactaacacacacaaacatatatttatacatattatagatacgtcaaatttcatttt
 || |||||| | ||  | |   ||||||| ||||| |||||||||   |||||   ||| || |||||||||||||||||||| |||||||||||||||||       | || || | ||  ||  |  | ||||  |   |    | |    | ||     |   || | ||    | ||||  |    |||           
GAAATGGGTATCGGGGTCGTACTCTGGTCACACAGCTGTTTGCTTGCGTGATGACGATGGCAAGTTATGGGTTGGTGAATCTGGCCATGAGAATGAAAAGgtgagcagcaaatttgtaggaaattcgcagtatctgcat-tggtttcatatagtcgca-----attgatctctaatttttttatgtacttttcag----------