1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGGTCCTCAGGGAAGAATAAATAGGGCTATTTGGGGACCTCTCAACAGAACCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAGgtgatttcacttccttcctgcctgaccctcttctttctttccattacattttgctttgctaacacttttacttaatttgtttgcag
species | Glycine max |
transcript | GLYMA01G03610.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAG ACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACCEST: gi|208147287|gb|GD944954.1|GD944954
genomic: CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAGgtgatttcac ... ttgtttgcagACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACC
EST: CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAG ACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACCEST: gi|19934429|gb|BQ079459.1|BQ079459
genomic: CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAGgtgatttcac ... ttgtttgcagACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACC
EST: CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAG ACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACCEST: gi|18717773|gb|BM522996.1|BM522996
genomic: CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAGgtgatttcac ... ttgtttgcagACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGCCATAAAAAGACC
EST: CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAG ACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGC
genomic: CCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAGgtgatttcac ... ttgtttgcagACGGGAAAACTGCTTAAAGAGTCAGACAAGGAATCTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTCCTCAGGGAAGAATAAATAGGGCTATTTGGGGACCTCTCAACAGAACCATTATTAGTGCCGGTGAAGATGCTGTTATTCGTATTTGGGATTCTGAGgtgatttcacttccttcctgcctgaccctcttctttctttccattacattttgctttgctaacacttttacttaatttgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT