1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagattttagcctccctcactcaaatactttcttgaatgtataggtgtaagcatttgtcttctcctttaagatgcaaaaaattgtgcttctcacctct...
species | Glycine max |
transcript | GLYMA01G03540.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACA-GG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|298196763|gb|HO041506.1|HO041506
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCEST: gi|193680678|gb|FK624038.1|FK624038
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGC
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|17021044|gb|BM092078.1|BM092078
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|298171167|gb|HO016199.1|HO016199
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|7925655|gb|AW831681.1|AW831681
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|208168717|gb|GD968735.1|GD968735
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|20497759|gb|BQ272689.1|BQ272689
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|21639000|gb|BM140046.1|BM140046
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|9258120|gb|BE346267.1|BE346267
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AATGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATACTCTGEST: gi|193423340|gb|FK389847.1|FK389847
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAA-CAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|208335440|gb|GE133385.1|GE133385
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCAC-TTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|208281372|gb|GE073730.1|GE073730
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|193327071|gb|FK291146.1|FK291146
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAA-CAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|20497767|gb|BQ272697.1|BQ272697
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACGAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|192319496|gb|FK005936.1|FK005936
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|207756379|gb|GD729546.1|GD729546
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: GGAGCCTAATGAAGGCACTTTTATTACTTACAACAAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|298189852|gb|HO038255.1|HO038255
genomic: GGAGCCTAATGAAGGCACTTTTATT-CTT-C-AC-AACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|213597292|gb|DB962082.1|DB962082
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|9258144|gb|BE346291.1|BE346291
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AATGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|193626942|gb|FK574062.1|FK574062
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|208336730|gb|GE135134.1|GE135134
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|193591619|gb|FK548666.1|FK548666
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|193544705|gb|FK501672.1|FK501672
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|193599449|gb|FK552434.1|FK552434
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|208231783|gb|GE031270.1|GE031270
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|193629144|gb|FK578092.1|FK578092
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|193467439|gb|FK432552.1|FK432552
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|298182273|gb|HO026448.1|HO026448
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCEST: gi|192319497|gb|FK005937.1|FK005937
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTC
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|12691346|gb|BG157682.1|BG157682
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAEST: gi|298165762|gb|HO008733.1|HO008733
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAA
EST: CA-TGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|207776271|gb|GD749592.1|GD749592
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGGEST: gi|207713636|gb|GD695311.1|GD695311
genomic: CAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
EST: CCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGG AAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
genomic: CCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagatttt ... attttaacagAAGGGCAAGATAAAACCTGTTCATGTTGTTGATGTTCCTGGGCATTCTCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAATGAAGGCACTTTTATTCTTCACAACGAGAAAACAAGGgtaagattttagcctccctcactcaaatactttcttgaatgtataggtgtaagcatttgtcttctcctttaagatgcaaaaaattgtgcttctcacctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaaaa