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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTGGGTCAAAGCAAACCTATTTATAATGCGTTCAAAGCCATTCAGGAGTCTCCTAATTGGCAGACACTTAGTGATGCTCGCAAACGTATAGTTGAAAgtaagttatcaagatgtcttgttgttgtgctgttcttgtgatgtgaatttatttgagtactgccatgttttttatgctaaaagttgcttgaaattgctct...

Basic information

species Glycine max
transcript GLYMA01G02480.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G02480.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 3
AGACTGGGTCAAAGCAAACCTATTTATAATGCGTTCAAAGCCATTCAGGAGTCTCCTAATTGGCAGACACTTAGTGATGCTCGCAAACGTATAGTTGAAAgtaagt----tatcaagatgtcttgttgttgtgctgttcttgtgatgtgaatttatttgagtactgccatgttttttatgctaaaagttgcttgaaattgctct
||  |||| ||||||||||| ||||||||||| || ||||| ||||| || |||||| | ||||| ||||| ||||||||||  ||||||||||| ||  || |||    | |    |||     || |||| |  ||  |   |||||| |   ||    |  || || |    | ||     | |     | ||||      
AGGTTGGGGCAAAGCAAACCCATTTATAATGCATTTAAAGCTATTCAAGAATCTCCTGAGTGGCAAACACTGAGTGATGCTCAGAAACGTATAGTGGACTgtgagtatacttttgtaatggaaattttttgttcattttgttccatgtgagtg-gttaaccttatggcaggaaactgatatattacgaaaactaaaatatt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717152|gb|BW657615.1|BW657615
EST:     GTCTCCTAATTGGCAGACACTTAGTGATGCTCGCAAACGTATAGTTGAAA                         GCCAAATAAAGGAGGCTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAA
genomic: GTCTCCTAATTGGCAGACACTTAGTGATGCTCGCAAACGTATAGTTGAAAgtaagttatc ... gcctttgcagGCCAAATAAAGGAGGCTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAA
EST: gi|192297389|gb|FG990681.1|FG990681
EST:     GTCTCCTAATTGGCAGACACTTAGTGATGCTCGCAAACGTATAGTTGAAA                         GCCAAATAAAGGAG-CTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAA
genomic: GTCTCCTAATTGGCAGACACTTAGTGATGCTCGCAAACGTATAGTTGAAAgtaagttatc ... gcctttgcagGCCAAATAAAGGAGGCTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAA
EST: gi|209701313|gb|BW655908.1|BW655908
EST:     GTCTCCTAATTGGCAGACACTTAGTGATGCTCGCAAACGTATAGTTGAAA                         GCCAAATAAAGGAGGCTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAA
genomic: GTCTCCTAATTGGCAGACACTTAGTGATGCTCGCAAACGTATAGTTGAAAgtaagttatc ... gcctttgcagGCCAAATAAAGGAGGCTGTTCTTAATGGAGTTTCTCTTGAAGATGATAAAA